Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0353.Seq
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9469| Best HMM Match : IRK (HMM E-Value=0)                          55   5e-08
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)                    52   4e-07
SB_35031| Best HMM Match : IRK (HMM E-Value=2.2e-06)                   45   8e-05
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  32   0.44 
SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)                    29   4.1  
SB_399| Best HMM Match : Glycos_transf_2 (HMM E-Value=0.96)            28   9.5  
SB_50538| Best HMM Match : Moricin (HMM E-Value=4.5)                   28   9.5  
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)                28   9.5  

>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
          Length = 520

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEA-YAIDIENLDTVEQVETPL 179
           L G+ +  G +TQ++TSY+ +EI+WGY FKN L ++  K   + ++  + D V  V+TP 
Sbjct: 347 LEGTVEATGMLTQAKTSYIGEEILWGYEFKNTLDHTSWKAGRFRVNYSHFDRVVPVDTPR 406

Query: 180 CSA 188
            SA
Sbjct: 407 VSA 409


>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
          Length = 610

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   LTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKE-AYAIDIENLDTVEQVETPL 179
           L G  ++ G  TQ+RTSY++ EI WG+ F  ++ Y   K  AY ID         V+TP 
Sbjct: 476 LEGIVESTGMTTQARTSYIADEIHWGHNFTELVTYDCFKNGAYHIDFSRFHDTYPVDTPR 535

Query: 180 CSACRLKDFEDNMKDSNTPTVLTQQCP 260
           CSA  L     NM+ S++ +  +  CP
Sbjct: 536 CSAREL-----NMQTSSS-SGCSSHCP 556


>SB_35031| Best HMM Match : IRK (HMM E-Value=2.2e-06)
          Length = 127

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   LTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSK-EKEAYAIDIENLDTVEQVETPL 179
           L G  +  G  TQ +TSYLS+EI+WG+ F  V   S  + + YA D    D +++V  P 
Sbjct: 29  LDGIVEATGMNTQPKTSYLSQEILWGHDFLQVADQSPFDVQYYASDYSKFDDMKKVAMP- 87

Query: 180 CSACRLKDFEDNMKDSNTPTVLTQQCP 260
                L  FE +  ++   T +T+ CP
Sbjct: 88  ----DLSPFE-STNNTLFETRMTRHCP 109


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 227 KHPNRLDPTMSISPTDLSLSQEDSSTISKLGDSLPSSP 340
           K  N+ D  M  S  DLS   +DSS ++KL  S P  P
Sbjct: 261 KQKNKTDIPMQTSKNDLSPMSQDSSKVTKLKRSTPEPP 298


>SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)
          Length = 504

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 24  MGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIE 143
           M   TQS+ + +  E+  G   K V K  K+K  YAI +E
Sbjct: 389 MAMTTQSKVAGMELEVCKGRGKKRVCKKQKQKWTYAIPLE 428


>SB_399| Best HMM Match : Glycos_transf_2 (HMM E-Value=0.96)
          Length = 488

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 363 WVAVLFRVGLDGRESPSLDIVEES-SWLKDRSVG 265
           W+ ++F  GL  R    LDI++ S SWL+   +G
Sbjct: 418 WINIMFSPGLFARNRYGLDILKHSQSWLQVGGMG 451


>SB_50538| Best HMM Match : Moricin (HMM E-Value=4.5)
          Length = 173

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 RLDPTMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNR 352
           RL  + +      SL++ED  T S+L  ++  SP LNR
Sbjct: 132 RLHQSRAAKNISASLAREDGETGSRLAQAIIPSPLLNR 169


>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
          Length = 901

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 57  LSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFED 212
           L K+IIW      VL+Y K+   Y    ++ D  +  + P C     +D ED
Sbjct: 679 LQKDIIWTSENLQVLRYDKDGH-YHCHYDSEDENKHPDIPCCHYSNHEDDED 729


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,873,650
Number of Sequences: 59808
Number of extensions: 462095
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)