Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0353.Seq
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifyi... 67 1e-11
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 57 1e-08
Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U64843-11|AAL08038.1| 365|Caenorhabditis elegans Hypothetical p... 30 2.1
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 30 2.1
AL117207-8|CAB60399.1| 362|Caenorhabditis elegans Hypothetical ... 29 2.7
AL023828-8|CAE53737.1| 125|Caenorhabditis elegans Hypothetical ... 29 3.6
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p... 28 6.3
U61945-5|AAB03128.1| 517|Caenorhabditis elegans Hypothetical pr... 28 8.3
>U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 2 protein.
Length = 514
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +3
Query: 3 LTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLC 182
L G +++G+ TQ+RTSYL EI+WG+RF+ ++ Y KE Y ID V V TP C
Sbjct: 336 LEGVVESVGSTTQARTSYLPSEILWGHRFEKLVHYKKENGQYNIDFGKFHNVYSVNTPTC 395
Query: 183 SACRLK 200
SA ++
Sbjct: 396 SAAEIE 401
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 3 LTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLC 182
L G ++ G Q++TSYL E++WG+RF+ ++ Y + +Y ID + + V TP
Sbjct: 330 LEGIVESTGMTAQAKTSYLPSEVLWGHRFRKLVTYQRSNGSYQIDYDLFHSTYPVRTPAM 389
Query: 183 SACRLKDFEDNMKD 224
S + N+KD
Sbjct: 390 SPAEFYSSKPNLKD 403
>Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical
protein K04G11.5 protein.
Length = 374
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 27 GAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 167
G Q+RTS+L EI+WGY+FK ++ +++ Y + D E+V
Sbjct: 303 GMTFQARTSFLPDEILWGYKFKPMVLMNEKLSKYEVHYSFFDQTERV 349
>U64843-11|AAL08038.1| 365|Caenorhabditis elegans Hypothetical
protein K06C4.17 protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 135 DIENLDTVEQVETPLCSA---CRLKDFEDN--MKDSNTPTVLTQQCPFRQQTYL*ARRTL 299
D+ D ++++ P +A R F +N + D N T + QCPF+ +L A T+
Sbjct: 6 DLHFQDLYDKIDPPFQNATPFARTGQFYENRSITDFNNTTQMIDQCPFKFSQHL-ALATI 64
Query: 300 PQYLNSAIL 326
P ++ IL
Sbjct: 65 PLFIVGLIL 73
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 290 EDSSTISKLGDSLPSSPTLNRTATQRSFGW 379
+D + KL +SLP N T TQ+ GW
Sbjct: 1525 QDGFPLDKLKESLPEDEKSNLTVTQKDVGW 1554
>AL117207-8|CAB60399.1| 362|Caenorhabditis elegans Hypothetical
protein Y60A3A.14 protein.
Length = 362
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = -1
Query: 698 IQFLSCTLVKFYLSRTPARKSMLDS*RYFSETPLTLRML--NYS*AVRICVDEQTFN*GI 525
+ F +CT + FY ++ P+R + D+ Y+S L + + ++S + + Q N
Sbjct: 181 LPFTACTAILFYFNKYPSRVFVGDTFCYWSGMTLAVVSILGHFSKTLMLFFVPQIINFLY 240
Query: 524 SLHQCTNL-----QRDGQLTPKTDTVT-SVASKHST 435
S+ Q +L R + PKTDTV+ S+A T
Sbjct: 241 SIPQLFHLVPCPRHRLPKYDPKTDTVSMSIAEFKKT 276
>AL023828-8|CAE53737.1| 125|Caenorhabditis elegans Hypothetical
protein Y17G7B.5b protein.
Length = 125
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -3
Query: 333 DGRESPSLDIVEESSWLKDRSVGEMDIVGSRRLGCLSLSCYL 208
D RE P LD ES VG + I RRL C S SC++
Sbjct: 56 DYREQPELDQYSESGMDDASDVGSLSIRERRRL-CRSDSCHV 96
>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.11 protein.
Length = 1080
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 239 RLDPTMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSF-GWNFRRFYPE 403
R S++ + L QE S SKLGD +PS T ++ F G F PE
Sbjct: 507 RPQSAQSVNLRESVLKQEIESRFSKLGDDVPSKKTFPEPKFKKVFLGRPPHGFLPE 562
>U61945-5|AAB03128.1| 517|Caenorhabditis elegans Hypothetical
protein C49C8.1 protein.
Length = 517
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = +2
Query: 278 SLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFYPEKYVNYGQEQKELNV 445
+L + ST SK S P LNR A Q NF P K ++ Q E V
Sbjct: 203 TLPSKGPSTKSKDLKPGRSKPILNRKAEQMKIKKNFNMLIPPKSIDQSQRTAEEKV 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,153,946
Number of Sequences: 27780
Number of extensions: 358748
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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