Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0353.Seq
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 248 PTMSISPTDLSLSQEDSSTISKLGDSLPSSP-TLNRTATQRSFGWNFRR 391
           P+M + P  +S      S I     +LPS P TL + + Q  F   F +
Sbjct: 649 PSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAK 697


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 332 SSPTLNRTATQRSFGWNFRRFYPEKY-VNYGQEQKELNVLKQQM 460
           S+P  N+T  + +  WN   F   KY + + +  ++  +L+  M
Sbjct: 32  STPDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWM 75


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 479 PKTDTVTSVASKHSTLFV 426
           P T T T+++ KH  +FV
Sbjct: 390 PSTTTSTTISQKHIKVFV 407


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 369 LLWVAVLFRVGLDGRESPSLDIVEESSWLKDRSV 268
           +++V + +R+G+ G  S   ++V  +  LKD+S+
Sbjct: 151 VIFVTINYRLGILGFLSTEDEVVPGNMGLKDQSM 184


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 369 LLWVAVLFRVGLDGRESPSLDIVEESSWLKDRSV 268
           +++V + +R+G+ G  S   ++V  +  LKD+S+
Sbjct: 22  VIFVTINYRLGILGFLSTEDEVVPGNMGLKDQSM 55


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 369 LLWVAVLFRVGLDGRESPSLDIVEESSWLKDRSV 268
           +++V + +R+G+ G  S   ++V  +  LKD+S+
Sbjct: 151 VIFVTINYRLGILGFLSTEDEVVPGNMGLKDQSM 184


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 706 LKHLNTQQTL*NSQSA 753
           LKHLNT+ TL +  +A
Sbjct: 299 LKHLNTEHTLDDRSTA 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,983
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)