Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0350.Seq
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 31 0.12
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 29 0.85
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.5
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 28 1.5
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 27 2.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.4
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 3.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 4.5
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.0
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 7.9
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 25 7.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.9
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 7.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.9
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 464 DHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQMQKK 607
+H H +P T + T E R Q++ D +ELDE R++ + ++KK
Sbjct: 275 NHQFHSRDSQPITQRHTDIESR-LQKMQDNAKELDESRRKKIELLEKK 321
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 482 GRVKPATAKVTTEEQRWAQQLADKQRELDEL-RQRTVSQMQKKIDSLQEELAQAKSARHN 658
GR++ + TE++ W ++L + EL+EL Q + + QK++ L E L + N
Sbjct: 42 GRLRLRKSSDQTEKKCWKEKLMKIRSELEELWEQSMMYEEQKELTQLGEMLDRLWDKHIN 101
Query: 659 HTFADAERLAE 691
+ +E +++
Sbjct: 102 SEGSKSETISD 112
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Frame = +2
Query: 365 AGDSGHGAAL*RPTQGTGRSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQL 544
A D+ A P + R P + +K + + + + + + +
Sbjct: 94 AVDTSEAVASMTPNKRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAM 153
Query: 545 ADKQRELDELRQRTVSQMQKKI-DSLQEELAQAKSARHNHTFADAERLAEE 694
+K L E ++T + K+ ++ +EE+A +++ N + AD+ AEE
Sbjct: 154 HEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSRVTAEE 204
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 396 DDRLKELADQNEHLQSLVDKYKTI 467
D+ L +LAD++E +Q ++ KY I
Sbjct: 155 DEELMDLADEDEEVQEILTKYNVI 178
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 83 AAHELESAQGSSREQRDQLERLRDELHRHKHKNDEAVAKAQETQLAEVA 229
A HE+ + + RE DQ++++ +++ K E++A ET+LA+ A
Sbjct: 55 ARHEIITLRNDHRELEDQIKKVLEKVFSGFSK--ESLAANDETKLAQEA 101
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 414 LADQNEHLQSLVDKYKTIIYDTEGVLSRLQQ 506
+ QNE L LV+K + IIY+ L ++++
Sbjct: 77 IVSQNERLMKLVNKQREIIYELHKDLEKVKK 107
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 146 LRDELHRHKHKNDEAVAKAQETQLAEVAAVLRS 244
L D+++R + KND+ + + +L+ + +LRS
Sbjct: 883 LTDKVNRRQRKNDKKIKNKIQVKLSSILEMLRS 915
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = +2
Query: 548 DKQRELDELRQRTVSQMQKKIDSLQEELAQAK 643
D+Q E+DELR+R ++ +++I ++ E +Q +
Sbjct: 175 DQQDEVDELRER-ITLKEERIQQMRNEASQRR 205
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 479 RVVYDRLVFVDETLEVFVLIGQFLESV 399
+ V+ +L F D TL++ V I +F+E V
Sbjct: 961 KCVHSKLQFTDATLKLIVKITKFIEKV 987
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 396 DDRLKELADQNEHLQSLVDKYKTIIYDTEGVLSRLQQK*RQRNS 527
DD+LK ++ Q EHL+ ++ K++ E +L R+Q +Q +
Sbjct: 426 DDKLKRVSSQLEHLKHNYEEEKSM---NENLLVRIQTLEKQNTT 466
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 491 KPATAKVTTEEQRWAQQ----LADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSARHN 658
K KV+T EQR Q L D+Q L E R +++ + ++ + + + + ++A +N
Sbjct: 222 KDEEKKVSTVEQRTQLQQLSRLQDQQNGLMESRSQSLKILDSNVNEMDKLIMERENALNN 281
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 354 ETEKQATVVTAPPSDDR-LKELADQNEHLQSLVDKYKT 464
E EK+ T SD+ L ++ ++NE +LVD+ KT
Sbjct: 532 EEEKEHTKGIKFSSDEESLSDMEEENETFDALVDRRKT 569
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 491 KPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFA 670
K K+T E + +++ DK E DEL QK++ +L+EE +AK + T
Sbjct: 598 KEEVEKLTDEITQLSERYNDKCHEFDEL--------QKRLQTLEEENNKAKEDSTSKTSN 649
Query: 671 DAERL 685
E+L
Sbjct: 650 LLEQL 654
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 428 RTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADK 553
RTPP S R IRH G+V T ++ AQQ+A+K
Sbjct: 161 RTPPTSGRF----SIRHDGQVCNITIAAEETLRQLAQQVAEK 198
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 497 ATAKVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEEL--AQAKSARHNHTFA 670
A KV E+ + ++ + + + + + Q+Q ++D L EEL AQ A
Sbjct: 257 ALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIA 316
Query: 671 DAERLAEER 697
+R EE+
Sbjct: 317 TLKRQIEEK 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,241
Number of Sequences: 5004
Number of extensions: 27306
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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