Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0350.Seq
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 428 RTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVS 592
           R+P  S+  +Q     +     PAT+ +TT      QQ   +Q++  + +Q++ S
Sbjct: 760 RSPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSSS 814


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = +2

Query: 92  ELESAQGSSREQRDQLERLRDELHRHKHKNDEAVAKAQE 208
           E+E  +   REQR+  +R+  +  + + +  +   + Q+
Sbjct: 68  EMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQ 106


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 518 EEQRWAQQLADKQRELDELRQRT 586
           +EQ  +++L +  R+LDE  +RT
Sbjct: 369 QEQLKSKKLEESMRKLDEEMKRT 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,562
Number of Sequences: 438
Number of extensions: 2046
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)