Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0350.Seq
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65220.1 68418.m08205 ribosomal protein L29 family protein co... 33 0.14
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 33 0.18
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 32 0.42
At2g37070.1 68415.m04549 expressed protein 31 0.56
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 31 0.98
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 30 1.3
At5g17900.1 68418.m02099 expressed protein 30 1.7
At1g19220.1 68414.m02392 transcriptional factor B3 family protei... 29 2.3
At4g18570.1 68417.m02749 proline-rich family protein common fami... 29 3.0
At4g08580.1 68417.m01410 microfibrillar-associated protein-relat... 29 3.0
At3g60600.1 68416.m06781 vesicle-associated membrane protein, pu... 29 3.0
At2g30960.1 68415.m03776 expressed protein 29 3.0
At2g21800.1 68415.m02591 expressed protein 29 3.0
At5g63720.1 68418.m07998 hypothetical protein 29 3.9
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 29 3.9
At5g03660.1 68418.m00325 expressed protein low similarity to out... 29 3.9
At4g27120.2 68417.m03898 expressed protein 29 3.9
At4g27120.1 68417.m03897 expressed protein 29 3.9
At3g22660.1 68416.m02860 rRNA processing protein-related contain... 29 3.9
At1g30650.1 68414.m03748 WRKY family transcription factor contai... 29 3.9
At4g32190.1 68417.m04581 centromeric protein-related low similar... 28 5.2
At3g58840.1 68416.m06558 expressed protein 28 5.2
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 28 5.2
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi... 28 6.9
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 28 6.9
At4g23060.1 68417.m03325 calmodulin-binding family protein conta... 27 9.1
>At5g65220.1 68418.m08205 ribosomal protein L29 family protein
contains Pfam profile PF00831: ribosomal protein L29
Length = 173
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 494 PATAKVTTEEQRWAQQLADKQR-ELDELRQRTVSQMQKKIDSLQEELAQ---AKSARHNH 661
PA A +++ + + + K+ EL E+R +T Q+Q+++ L+ EL KSAR+
Sbjct: 43 PAAATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEF 102
Query: 662 TFADAERLAEE 694
+D R+ ++
Sbjct: 103 KSSDFRRMKKQ 113
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 425 ERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDEL-RQRTVSQMQ 601
E+ + R +I +++++ RV+ A K E QR ++ + REL+EL RQ+ + +
Sbjct: 148 EQQEKEERERIAEENLK---RVEEAQRKEAMERQRKEEE---RYRELEELQRQKEEAMRR 201
Query: 602 KKIDSLQEELAQAK 643
KK + +E L Q K
Sbjct: 202 KKAEEEEERLKQMK 215
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 31.9 bits (69), Expect = 0.42
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Frame = +2
Query: 92 ELESAQGSSREQRDQLERLRDELHRHKHKNDEAVAKAQETQLAEVAAVLRSACSAPRPMT 271
+LE AQ + +E D+L L+D H+ K ++ K+ + Q+A++ L +A + ++
Sbjct: 373 KLEQAQNTIKELMDELGELKDR-HKEKESELSSLVKSADQQVADMKQSLDNAEEEKKMLS 431
Query: 272 PXQTSPG*EPRRQPRTIADSTEGLAAQGDREAGDSGHGAAL*RPTQGTGRSERTPPKSRR 451
E + +TI + + Q G R T + E + S
Sbjct: 432 QRILDISNEIQEAQKTIQEHMSE-SEQLKESHGVKERELTGLRDIHETHQRESSTRLSEL 490
Query: 452 QIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQREL-DELRQRTVSQMQKKIDSLQEE 628
+ Q + RV +A + E+ + L+ E+ DEL+ Q Q K+ L E
Sbjct: 491 ETQLKLLEQ--RVVDLSASLNAAEEE-KKSLSSMILEITDELK-----QAQSKVQELVTE 542
Query: 629 LAQAK 643
LA++K
Sbjct: 543 LAESK 547
>At2g37070.1 68415.m04549 expressed protein
Length = 420
Score = 31.5 bits (68), Expect = 0.56
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Frame = +2
Query: 128 RDQLERLRDELHRHKH-----KNDEAVAKAQETQLAEVAAV-----LRSACSAPRPMTPX 277
R L ++++LHR K+D V QE + + A L S + P P T
Sbjct: 4 RKSLPAVQEDLHRSTESMSTLKSDCTVETGQEFFMCDAATPDKRKDLGSTEAVPSPTTST 63
Query: 278 QTSPG*EPRRQPRTIADS----TEGLAAQGDREAGDSGHGAAL*RPTQGTGRSERTPPKS 445
P E + +P I ++GLA H ++ RP+ G R K+
Sbjct: 64 LDDPSSEEKMKPNPIRKRPGIRSQGLAKATKHPVASEEHNTSISRPSTGLNRPSSGLSKT 123
Query: 446 RRQIQD 463
+R D
Sbjct: 124 KRASVD 129
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 30.7 bits (66), Expect = 0.98
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Frame = +2
Query: 419 RSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRE----LDELRQRT 586
R ER ++ +Q+ R + A+ +EQR + ++RE L + RQR
Sbjct: 175 RIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRD 234
Query: 587 VSQMQKKIDSLQEELAQAK--SARHNHTFADAERLAEER 697
+ Q++ QE L Q + NH D + L E+R
Sbjct: 235 SIERQRR--EAQENLQQQRLQDMPENHNVDDQQNLQEQR 271
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 521 EQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSA 649
E++ + + KQR L E Q+T+ ++ + +LQ++L QAK +
Sbjct: 183 EEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDS 225
>At5g17900.1 68418.m02099 expressed protein
Length = 435
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 419 RSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQM 598
R +T ++R +++ DH R++ A T EE+ Q+ D+ + D L +R
Sbjct: 78 RLAKTKVENRDEVRADH----RRIRQAEIIYTEEEESRNQENRDEDDDEDALEERRRRIR 133
Query: 599 QKKIDSLQEELA 634
+K + QEE A
Sbjct: 134 EKNLRRAQEEAA 145
>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 1086
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 464 DHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQMQ 601
+HI + +PA K ++Q+ QQ +Q++L + +Q +SQ Q
Sbjct: 479 NHISQQMQAQPAMVKSQQQQQQQQQQHQHQQQQLQQQQQLQMSQQQ 524
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 539 QLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFADAERLAE 691
Q+ADK E+DELR+ T +++ + + L+ E +++ R + E AE
Sbjct: 127 QIADKNGEIDELRKET-ARLAEDNERLRREFDRSEEMRRECETREKEMEAE 176
>At4g08580.1 68417.m01410 microfibrillar-associated protein-related
similar to Microfibrillar-associated protein 1
(Associated microfibril protein) (AMF)
(Swiss-Prot:P55080) [Gallus gallus]
Length = 435
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 419 RSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQM 598
R +T ++R +++ DH R++ A T EE+ Q+ D+ + D L +R
Sbjct: 78 RLAQTKVENRDEVRADH----RRIRQAEIISTEEEESRNQENRDEDDDEDALEERRRRIK 133
Query: 599 QKKIDSLQEELA 634
+K + QEE A
Sbjct: 134 EKNLRRAQEEAA 145
>At3g60600.1 68416.m06781 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 256
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 449 RQIQDDHIRHGGRVKPATAKVT--TEEQRWAQQLADK-QRELDELRQRT 586
R I D+ H A A +T TEE++ A QL ++ QRELD+LR+ +
Sbjct: 178 RFIVDNKAGHQENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRES 226
>At2g30960.1 68415.m03776 expressed protein
Length = 260
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/44 (27%), Positives = 29/44 (65%)
Frame = +2
Query: 521 EQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSAR 652
++RW + K++E +E R++ ++ +KKI+ +E+L +A+ +
Sbjct: 30 QERWLNEKEKKRKEEEERRRKLQAEEEKKIE--EEDLKKAEEEK 71
>At2g21800.1 68415.m02591 expressed protein
Length = 475
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 443 SRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDE-LRQRTVSQMQKKIDSL 619
S + +D + GR K +T A L K+ DE R ++QK+ + L
Sbjct: 155 SDHEKEDTGVEKMGRKKQTITSKSTSLS--ADSLPKKKMSKDEKTRAAEEKKLQKEQEKL 212
Query: 620 QEELAQAKSARHNHTFADAERLAEER 697
Q+ ++A+ A H + ++ A+E+
Sbjct: 213 QKAASKAEDAEHKKLEREKQKWAKEK 238
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = +2
Query: 380 HGAAL*RPTQGTGRSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQR 559
HGA +P+ SE TPP QI HI KP AK T + Q+
Sbjct: 75 HGA---KPSNVADSSETTPPAMLSQINGSHITRVS--KPLEAKGTLQRDLRVDQIRSNPS 129
Query: 560 ELDELRQRTVSQMQKKIDSLQEELAQAKS 646
+ D L + V ++ +ID+ L+ S
Sbjct: 130 K-DVLTEEVVDAIE-QIDTQLSALSFVSS 156
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +2
Query: 98 ESAQGSSREQRDQLERLRDELHRHKHKNDEAVAKAQETQLAEVAAVLRSACSAPRPMTPX 277
E + S+ + ++++ + ++ K+ E V A+E A+ A + +AP P
Sbjct: 4 EKVKASAEKVKEKVPAKKAKVQASAKKDKEKVP-AEEQAPAQTTATAMATNAAPTTAAPT 62
Query: 278 QTSPG*EPRRQPRTIADST 334
T+P P + + DST
Sbjct: 63 TTAPTTAPTTESPMLDDST 81
>At5g03660.1 68418.m00325 expressed protein low similarity to outer
surface protein F [Borrelia burgdorferi] GI:466482;
contains Pfam profile PF04949: Family of unknown
function (DUF662)
Length = 173
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 485 RVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEEL 631
RV+ +V E +R A + + D +R+ V+ ++KKIDSL +EL
Sbjct: 64 RVQAQLGRVEDESKRLAMIREELEGFADPMRKE-VTMVRKKIDSLDKEL 111
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Frame = +2
Query: 344 AAQGDREAGDSGHGAAL*RPTQGTGRSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEE 523
A+ ++G G+ + G R K ++ Q+ + + + AT + +
Sbjct: 65 ASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQEREAQR--QAEEATRESRNTK 122
Query: 524 QRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFA-DAERLAEE 694
Q W ++ K+ E E + + + +K + +EE A + + F+ DAE EE
Sbjct: 123 QDWYAEMRRKKDEEREAEELKLEEEEKARQAKEEEAAALEFDKWKGEFSVDAEGTTEE 180
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Frame = +2
Query: 344 AAQGDREAGDSGHGAAL*RPTQGTGRSERTPPKSRRQIQDDHIRHGGRVKPATAKVTTEE 523
A+ ++G G+ + G R K ++ Q+ + + + AT + +
Sbjct: 65 ASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQEREAQR--QAEEATRESRNTK 122
Query: 524 QRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFA-DAERLAEE 694
Q W ++ K+ E E + + + +K + +EE A + + F+ DAE EE
Sbjct: 123 QDWYAEMRRKKDEEREAEELKLEEEEKARQAKEEEAAALEFDKWKGEFSVDAEGTTEE 180
>At3g22660.1 68416.m02860 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 293
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +3
Query: 393 SDDRLKELAD---QNEHLQSLVDKYKTIIYDTEGVLSRLQ 503
+D + L+D +NE + L + KT IY+ +G+L +LQ
Sbjct: 22 TDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQ 61
>At1g30650.1 68414.m03748 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 430
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 131 DQLERLRDELHRHKHKNDEAVAKAQETQLAEVAAVLRSAC 250
+Q+ R ELH H+H+ D+ A +E + ++ +L C
Sbjct: 354 NQIAPYRPELHDHQHQPDDFFADLEELEGDSLSMLLSHGC 393
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 548 DKQRELDELRQRTVSQMQKKIDSLQEELAQA 640
++ +E E R++T+S+ K +SLQEEL +A
Sbjct: 143 NRAKEELEKREKTISEASLKHESLQEELKRA 173
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 518 EEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFADAERLAEER 697
EE+ + ++ RE+D+ ++R + ++QK + L EL K+ + ++L EE
Sbjct: 174 EEKSKKLRSEEEMREIDDEKKREIEELQKTVIVLNLEL--VKNVEELKKWKSKKKLTEEA 231
Query: 698 L 700
L
Sbjct: 232 L 232
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +2
Query: 449 RQIQDDHIRHGGRVKPATAKVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEE 628
++ D +RH + K+ E+ + Q+ +L++ RQR V +
Sbjct: 396 KRFSDAAMRHEREQQEVINKMKESEKEKSMQVETLMSKLEDTRQRLVCSENR------NR 449
Query: 629 LAQAKSARHNHTFADAERLAEE 694
L +A+ + FADA++ EE
Sbjct: 450 LLEAQVSEEQLAFADAQKKLEE 471
>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 701
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 566 DELRQRTVSQMQKKIDSLQEELAQ-AKSARHNHTFADAERLAEERL 700
D + Q+ +K+D L EE+++ S H D + EER+
Sbjct: 584 DSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERV 629
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 360 EKQATVVTAPPSDDRLKELADQNEHLQSLVDKYKTIIYDTE 482
++++ A ++R+K+LAD+N+ L LV + I +TE
Sbjct: 1137 KEESLTEDASIDNERVKKLADENKDLNDLVSSLEKKIDETE 1177
>At4g23060.1 68417.m03325 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 543
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 344 AAQGDREAGDSGHGAAL*RPTQGTGRSERTPPKSR-RQIQDDHIRHGGR 487
AA + + AA+ R T +GRS R+P K+R DD + HG +
Sbjct: 109 AAVAEAAVAAANAAAAVVRLTSTSGRSTRSPVKARFSDGFDDVVAHGSK 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,170,413
Number of Sequences: 28952
Number of extensions: 157443
Number of successful extensions: 922
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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