Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0349.Seq
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    46   9e-06
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.4  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   4.3  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    27   4.3  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   5.7  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 26/56 (46%), Positives = 30/56 (53%)
 Frame = +1

Query: 37  TFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASANIIEK 204
           T GEG HNYHH FP DYR       Y + T  FI   +  G AY+L T   N I+K
Sbjct: 278 TLGEGNHNYHHAFPNDYRNGLRWYEY-DPTKIFIYIASLFGLAYNLNTFPDNEIQK 332


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 177 FQIISPSHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVM 64
           ++ ++   PCK +  P C I      ++CP   ++N++
Sbjct: 51  YEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNML 88


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 198 NNIGGSS-FQIISPSHPCKE 142
           NNI     F +I P HPCKE
Sbjct: 414 NNIADDDLFDVILPKHPCKE 433


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 462 DLKLIKKCISLNEYNKTQYKNYQQKLKVISKDKN 361
           DL L +K  SLN+ +K   KN  +K K +SK  +
Sbjct: 172 DLALSEKTHSLNKASKKSNKNGDKKRKHVSKSNS 205


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 19  GMANAFTFGEGFHNYHHVFPW 81
           G  N F +  G+H  HH FP+
Sbjct: 278 GPLNFFVYNAGYHIEHHDFPY 298


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 276 KLFEDCFIQPIWSFVSPIPCS*CPLLNNIGGSSFQIISPSH 154
           K  EDC    IW      P    P+L  I G   Q+ +P H
Sbjct: 77  KYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLH 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,845
Number of Sequences: 5004
Number of extensions: 68717
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)