Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0349.Seq
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               72   7e-13
SB_2286| Best HMM Match : Cu_bind_like (HMM E-Value=6.6)               30   2.6  
SB_49228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0)               29   3.5  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   6.1  
SB_36820| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)                    28   8.0  
SB_3750| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 33/62 (53%), Positives = 39/62 (62%)
 Frame = +1

Query: 37  TFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASANIIEKRALR 216
           T GEG+HNYHH FP DY A E G R +N++TR ID +A MG   D K      I KR +R
Sbjct: 196 TSGEGYHNYHHTFPQDYAASEFGTR-LNMSTRLIDMWAAMGLVSDRKVVPKETIRKRMMR 254

Query: 217 TG 222
           TG
Sbjct: 255 TG 256


>SB_2286| Best HMM Match : Cu_bind_like (HMM E-Value=6.6)
          Length = 326

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 19  GMANAFTF--GEGFHNYHHVFPWDYRADE 99
           G+ + F F  GEG+HN H +  +D  ADE
Sbjct: 115 GLGDVFVFYPGEGYHNVHVIRGYDTAADE 143


>SB_49228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 19  GMANAFTF--GEGFHNYHHVFPWDYRADELG 105
           G+ + F F  GEG+ N H +  +D  ADE+G
Sbjct: 208 GLGDVFVFYPGEGYRNVHVIRGYDTAADEVG 238


>SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 331

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 19  GMANAFTFGEGFHNYHHVFP 78
           G  N  TF  G+HN HH FP
Sbjct: 247 GPLNYLTFNVGYHNEHHDFP 266


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 393 VGNFCIGFYCIHLNLYIFLLVLSQILKLIIGYKRNITLSHKRV------KFPSFVTVILL 554
           VG  C+  Y   + LY+ + V  Q     +G KR   L+ KR+       F  FVT ++L
Sbjct: 405 VGVLCVMIYLTSVGLYVRIYVFVQKASSQLGVKREARLA-KRISLMVLTNFFFFVTPMIL 463

Query: 555 SKAFVY 572
              +VY
Sbjct: 464 FLIYVY 469


>SB_36820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 19  GMANAFTF--GEGFHNYHHVFPWDYRADE 99
           G+ N F F  GEG+ N H +  +D  ADE
Sbjct: 65  GLGNVFVFYPGEGYRNVHVIRGYDTAADE 93


>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
          Length = 1667

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 19  GMANAFTF--GEGFHNYHHVFPWDYRADE 99
           G+++ F F  GEG+ N H +  +D  ADE
Sbjct: 124 GLSDVFVFYPGEGYRNVHVILGYDTAADE 152


>SB_3750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 19  GMANAFTF--GEGFHNYHHVFPWDYRADELGDRY 114
           G+ + F F  GEG+ N H +  +D  ADE    Y
Sbjct: 93  GLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSHY 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,722,510
Number of Sequences: 59808
Number of extensions: 445233
Number of successful extensions: 1104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)