Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0349.Seq
         (828 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.6  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    24   6.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   8.7  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 462 DLKLIKKCISLNEYNKTQYKNYQQKLKVI 376
           DLKL KKC    E  + QY  ++Q+++ I
Sbjct: 246 DLKLAKKC---TEEKEQQYNQFKQEMEAI 271


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 6/30 (20%), Positives = 15/30 (50%)
 Frame = +1

Query: 67  HVFPWDYRADELGDRYINLTTRFIDFFAWM 156
           ++ PW+ R  E+   + ++   +  F  W+
Sbjct: 130 YLIPWESRIKEIESHFGSVVASYFTFLRWL 159


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 447  KKCISLNEYNKTQYKNYQQKLKVISKDK 364
            +K + L E  + QYK   ++ KV+  DK
Sbjct: 983  QKAMVLLEREEEQYKEVMRRKKVVEDDK 1010


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,749
Number of Sequences: 2352
Number of extensions: 16682
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)