Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0348.Seq
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q21TZ3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A6LJN4 Cluster: Response regulator receiver modulated d...    33   7.9  

>UniRef50_Q21TZ3 Cluster: Putative uncharacterized protein; n=1;
           Rhodoferax ferrireducens T118|Rep: Putative
           uncharacterized protein - Rhodoferax ferrireducens
           (strain DSM 15236 / ATCC BAA-621 / T118)
          Length = 256

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -1

Query: 343 MEKRTHGPLCGKNYERYIYLLKYLNLQVVA*SGHVWSAPQLPSGGDAGNYNNM 185
           +E + H PL GKN  R +  L YL+  V     HV+ AP++ +G +A +  N+
Sbjct: 104 IEVKWHAPLSGKNQLR-LQWLNYLDEDVRQNCWHVFIAPEISAGLEARDSGNV 155


>UniRef50_A6LJN4 Cluster: Response regulator receiver modulated
           diguanylate cyclase; n=1; Thermosipho melanesiensis
           BI429|Rep: Response regulator receiver modulated
           diguanylate cyclase - Thermosipho melanesiensis BI429
          Length = 463

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 562 IRSDLISRVNIETNKYIHSEERIVYCVVFLTDNIFAFKNLQILFFITNFQRAF 720
           +R++L+        +YIH E  ++ C+  L    F FK+L  L F    +R +
Sbjct: 151 LRNELVISEIYSFLEYIHDERYLIECIYKLFKEFFEFKSLHTLIFNVESERIY 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,193,431
Number of Sequences: 1657284
Number of extensions: 13737353
Number of successful extensions: 27837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27829
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)