Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0348.Seq
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   3.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 694 RIRFVNF*MQIYCL*GRPHNRRFFLHYVYICSFLY*LSK 578
           +IRF+N  +++    GR  NRR F+ +  IC     LSK
Sbjct: 198 QIRFLNQYLRLKPE-GRISNRRVFISFSKICYLHQHLSK 235


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 694 RIRFVNF*MQIYCL*GRPHNRRFFLHYVYICSFLY*LSK 578
           +IRF+N  +++    GR  NRR F+ +  IC     LSK
Sbjct: 216 QIRFLNQYLRLKPE-GRISNRRVFISFSKICYLHQHLSK 253


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 340 EKRTHGPLCGKNYERYIYLLKYL 272
           EKR   P+C K + R  +L K++
Sbjct: 372 EKRFACPICNKRFMRSDHLAKHV 394


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +1

Query: 628 IVYCVVFLTDNIFAFKNLQILFFITNFQRAFKNLFYLLYSNSEFTLSVV 774
           +V+C++ +   +     + I+ F T   R   N+F +  S ++  + +V
Sbjct: 72  MVFCIIIMCLGVIGNVMVPIVIFKTKDMRNSTNIFLVNLSVADLMVLLV 120


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +1

Query: 628 IVYCVVFLTDNIFAFKNLQILFFITNFQRAFKNLFYLLYSNSEFTLSVV 774
           +V+C++ +   +     + I+ F T   R   N+F +  S ++  + +V
Sbjct: 72  MVFCIIIMCLGVIGNVMVPIVIFKTKDMRNSTNIFLVNLSVADLMVLLV 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,661
Number of Sequences: 336
Number of extensions: 3867
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)