Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0348.Seq
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99273-3|CAB16478.1|  392|Caenorhabditis elegans Hypothetical pr...    32   0.52 
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    29   4.9  

>Z99273-3|CAB16478.1|  392|Caenorhabditis elegans Hypothetical
           protein Y45F10C.3 protein.
          Length = 392

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +1

Query: 538 HYRRISVAIRSDLISRVNIETNKYIHSEERIVYCVVFLTDNIFAFKNLQILFFITNFQRA 717
           H+RR  +AI+SD   R+  +    + + E   Y  +   D         I FF  N +  
Sbjct: 304 HFRRFEIAIKSDFTERMARKIRDVLTNSEHFEYAHIITQD---LHHRTVIKFFNRNAENV 360

Query: 718 FKNLFYLLYSNSE 756
           F N   + Y+N +
Sbjct: 361 FWNYGSMNYNNKK 373


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/114 (23%), Positives = 45/114 (39%)
 Frame = +1

Query: 430 GHVTVRFQ*IMLIYVTIHINHT*STNIRSGMEKEKKHYRRISVAIRSDLISRVNIETNKY 609
           G+   RFQ    +Y    INH       +GM +      RIS+AIR  L      ET   
Sbjct: 40  GNNFFRFQRAAPVYPKNMINHNLDGAATTGMRRTTSSIARISMAIRRSLRLPRRAETRMA 99

Query: 610 IHSEERIVYCVVFLTDNIFAFKNLQILFFITNFQRAFKNLFYLLYSNSEFTLSV 771
              E+ +V  +  +   +F     +   F+  + + F   F+ +  +  F + V
Sbjct: 100 AREEQVLVEPIASVV--LFPLLKRERAQFVNRWNKGF--TFWSIELHQNFAVEV 149


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 306 FFPHSGP*VRFSIFANKENEQWTLKIIIN 392
           +F HSG  +++++FA  E+  W++ +II+
Sbjct: 301 YFYHSGKVIQYAVFALTESSIWSIALIID 329


>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +1

Query: 430 GHVTVRFQ*IMLIYVTIHINHT*STNIRSGMEKEKKHYRRISVAIRSDLISRVNIETNKY 609
           G+   RFQ    +Y    INH       +GM +      RIS+AIR  L      ET   
Sbjct: 40  GNNFFRFQRAAPVYPKNMINHNLDGAATTGMRRTTSSIARISMAIRRSLRLPRRAETRMA 99

Query: 610 IHSEERIV 633
              E+ +V
Sbjct: 100 AREEQVLV 107


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +1

Query: 628 IVYCVVFLTDNIFAFKNLQIL----FFITNFQRAFK--NLFYLLYSNSEFTLSVV 774
           I+YCV+F+T  +   ++L+ +    FF+   ++  K   +F  ++    F L+VV
Sbjct: 307 ILYCVLFITATVSTLRSLEFIKSLGFFVHILKKMMKTVGMFVFIFCTFWFVLAVV 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,028,999
Number of Sequences: 27780
Number of extensions: 346797
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)