Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0348.Seq
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 614  IVKKESSIVWSSSQTIYLHLKIYKSYSL 697
            I  K++ I  SSS+TI   LK Y +YS+
Sbjct: 1128 IYTKDTKIT-SSSETILHGLKKYTNYSM 1154


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 712 RAFKNLFYLLYSNSEF 759
           RAF+ L +L YSNS F
Sbjct: 305 RAFQVLTWLGYSNSAF 320


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 650 SQTIYLHLKIYKSYSL*QISN 712
           +Q +YLH ++   Y L ++SN
Sbjct: 274 AQYLYLHQQLLARYELNRLSN 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,977
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)