Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0348.Seq
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18490.1 68414.m02308 expressed protein                             29   3.4  
At3g58670.1 68416.m06539 expressed protein                             28   6.0  

>At1g18490.1 68414.m02308 expressed protein
          Length = 282

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 158 PSTGGVLHCYSVLTP 114
           P TGG LHC++ LTP
Sbjct: 195 PKTGGNLHCFTALTP 209


>At3g58670.1 68416.m06539 expressed protein
          Length = 242

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 158 PSTGGVLHCYSVLTPLTHYVIFNLLT 81
           P+TGG +HC+     +TH  IF++L+
Sbjct: 157 PTTGGNIHCFKA---ITHCAIFDILS 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,032
Number of Sequences: 28952
Number of extensions: 302494
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)