Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0347X.Seq
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   2.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   8.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   8.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    20   8.9  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 225 LNSSTSLCPAPST----HSGSTARGHRSYMASPWE 133
           ++SSTS  P+PST     +  T   H +Y   P+E
Sbjct: 125 VSSSTSSIPSPSTTDDLSTNPTPPPHYTYQIIPYE 159


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 275 QLSNSTDQNVSVSRGTD*TVPHRYAQHPLPIVAPLHADTAHIW 147
           QL + T  ++ ++R      P    Q+P PI++P  +  A  W
Sbjct: 148 QLDSKTAGSMGLTRPP--MYPFPAGQYPYPILSPEMSQVAASW 188


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 275 QLSNSTDQNVSVSRGTD*TVPHRYAQHPLPIVAPLHADTAHIW 147
           QL + T  ++ ++R      P    Q+P PI++P  +  A  W
Sbjct: 40  QLDSKTAGSMGLTRPP--MYPFPAGQYPYPILSPEMSQVAASW 80


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 193 LYP*WLHCTR 164
           L+P W++CTR
Sbjct: 189 LWPAWVYCTR 198


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 119 EVIDFSHGLAIYERCPRAVEPLWV 190
           EV +  +GL + ++  R+V+  WV
Sbjct: 894 EVPEVPYGLKVLDKSGRSVQLSWV 917


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 225 LNSSTSLCPAPSTHSG 178
           +NS  S+CPA  T  G
Sbjct: 349 INSFASVCPAQLTIQG 364


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 225 LNSSTSLCPAPSTHSG 178
           +NS  S+CPA  T  G
Sbjct: 349 INSFASVCPAQLTIQG 364


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 287 CSLCQLSNS 261
           C+LCQ++NS
Sbjct: 222 CNLCQVANS 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,082
Number of Sequences: 336
Number of extensions: 2491
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)