Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0347X.Seq
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028) 129 1e-30
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086) 32 0.23
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 30 0.95
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 30 0.95
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50885| Best HMM Match : UCH (HMM E-Value=4.9e-06) 29 2.2
SB_25806| Best HMM Match : DUF159 (HMM E-Value=0.37) 28 3.8
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_41954| Best HMM Match : SWIM (HMM E-Value=8.9) 27 6.7
SB_32278| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 27 8.8
>SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)
Length = 253
Score = 129 bits (311), Expect = 1e-30
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = +2
Query: 47 DAFPSIDKIPKVTSPVLVIHGTEDEVIDFSHGLAIYERCPRAVEPLWVEGAGHNDVELFN 226
D SI+K+ K+ SPVLV+HGTEDEVIDFSHGLAIYERCPRAV+PLWVEGAGHNDVEL+
Sbjct: 177 DLASSIEKVSKIVSPVLVVHGTEDEVIDFSHGLAIYERCPRAVDPLWVEGAGHNDVELYG 236
Query: 227 QYLERLKRF 253
QYLERLK+F
Sbjct: 237 QYLERLKQF 245
>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
Length = 502
Score = 31.9 bits (69), Expect = 0.23
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 182 VAPLHADTAHIWRVRGRSQLPHPRFHESQELEK 84
V PLH A++W + S LP FH QE ++
Sbjct: 359 VFPLHPPIANVWPLLSNSLLPREAFHPQQESQQ 391
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.9 bits (64), Expect = 0.95
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = -3
Query: 330 CRILFITLCCLASGLQSLSVEQLYRSKRFSLSRY*LNSSTSLCPAPSTHSGSTARGHRSY 151
CR + L SGL +SK F+ L +C ++SG + R
Sbjct: 3212 CRRKMLAASALISGLGGEKERWTEQSKEFAEQIGRLVGDVLVCTGFLSYSGPFNQEFREL 3271
Query: 150 MASPWEKSITSSSVP 106
+ S W+K + S +P
Sbjct: 3272 LMSNWQKEMKSRKIP 3286
>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1256
Score = 29.9 bits (64), Expect = 0.95
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = -3
Query: 330 CRILFITLCCLASGLQSLSVEQLYRSKRFSLSRY*LNSSTSLCPAPSTHSGSTARGHRSY 151
CR + L SGL +SK F+ L +C ++SG + R
Sbjct: 196 CRRKMLAASALISGLGGEKERWTEQSKEFAEQIGRLVGDVLVCTGFLSYSGPFNQEFREL 255
Query: 150 MASPWEKSITSSSVP 106
+ S W+K + S +P
Sbjct: 256 LMSNWQKEMKSRKIP 270
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 209 RYAQHPLPI-VAPLHADTAHIWRVRGRSQLPHPRFHESQEL 90
+Y HP I + P+H T H+ +R S+ P + ES ++
Sbjct: 253 QYVYHPQLIKIKPVHIVTPHVGPLRDSSKAPETQVSESMQM 293
>SB_50885| Best HMM Match : UCH (HMM E-Value=4.9e-06)
Length = 286
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 83 TSPVLVIHGTEDEVIDFSHGLAIYERCPRAVEPL 184
TS LV T D+V S + YERCP E L
Sbjct: 241 TSDELVEVATHDQVFSSSAYMLYYERCPAGFEEL 274
>SB_25806| Best HMM Match : DUF159 (HMM E-Value=0.37)
Length = 563
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = -3
Query: 330 CRILFITLCCLASGLQSLSVEQLYRSKRFSLSRY*LNSSTSLCPAPSTHSGSTARGHRSY 151
CR L GL + +SK+F L L ++SG + R+
Sbjct: 95 CRRKMANATALIDGLGGEKIRWTEQSKKFDQQIQRLVGDVLLATGFLSYSGPFNQEFRNL 154
Query: 150 MASPWEKSITSSSVP 106
+ S W+K + + +P
Sbjct: 155 LQSTWKKDMRKAKIP 169
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 296 PVACSLCQLSNSTDQNVSVSRGTD*TVPHRYAQHPLPI 183
PVA SL Q S +T+++ S RGT Y +H P+
Sbjct: 609 PVAGSLLQPSYNTEEDTSKLRGTQQRQKFYYDKHSKPL 646
>SB_41954| Best HMM Match : SWIM (HMM E-Value=8.9)
Length = 101
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 137 HGLAIYERCPRAVEPLWVEGA 199
HGLA+ +RC AV P VE A
Sbjct: 56 HGLAVLQRCLHAVHPPSVEHA 76
>SB_32278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 141 DSPYMSGVRVQWSHYG*RVLGITMWNCSISTSRD 242
+SP SGV + WS++ + G+ CSI T +
Sbjct: 157 ESPKYSGVDIDWSNWNTYIQGLAC-RCSIKTREE 189
>SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 62 IDKIPKVTSPVLVIHGTEDEVIDFSHGLAIYERCPRAVEPLWVEGAGHN 208
++ P + +L++HG DE + F H + +A +P + G N
Sbjct: 286 VNNFPDEENRLLLVHGLIDENVHFYHTSLLINELVKACKPYQLLHEGDN 334
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 294 SGLQSLSVEQLYRSKRFSLSRY*LNSSTSLCPAPSTHSGSTARGHR 157
SG+++ + L + + NSST + P PS ++G T+ R
Sbjct: 1380 SGMKTADKDSLLSETQVTSKTQQANSSTHISPKPSINTGETSETGR 1425
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,857
Number of Sequences: 59808
Number of extensions: 319801
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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