Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0347X.Seq
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 251 NVSVSRGTD*TVPHRYAQHPLPIVAPLHADTAHIWR 144
           N  + R  D  V   Y +  + IV+P    T  IW+
Sbjct: 256 NTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQ 291


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 111 PRMR*LTSPTDSPYMSG 161
           PR R L SP+DS   SG
Sbjct: 569 PRFRKLDSPSDSGIESG 585


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 232 VLIEQFHIVMPSTLYP*WLHCTRTPLIY 149
           V +E   I+MP+  +  W++    P IY
Sbjct: 332 VPVEPPDILMPALTWLGWINSAINPFIY 359


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 15  HFQTPRELGFSMHFPVLTKYPKLLLQFL*FMEPRMR*LTSPTD 143
           H++ P  +     FP +  +  LLL  L  ++PR   ++S  D
Sbjct: 864 HWKFPNLVEVLDEFPSVRPFAPLLLLHLTPLQPRFYSISSSPD 906


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 241 SLEVLIEQFHIVMPSTLYP 185
           S++  I +F  + PSTL+P
Sbjct: 133 SIQEQIPRFRHIGPSTLFP 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,513
Number of Sequences: 438
Number of extensions: 3006
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)