Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0346.Seq
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   3.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.2  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 213 NQPHGCQPLKHFSHVGCETPR 275
           N+P G + L  F+  GC  P+
Sbjct: 564 NRPQGGEELAQFNFCGCGWPQ 584


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +2

Query: 428 FFCCWRTCATTHCASSLW*RIHSVLISAHIVNQSCE 535
           F+ C   C+T H  S     IH +  + H +    E
Sbjct: 647 FYICHVCCSTIHEVSKAGELIHKIETNDHEIIDKIE 682


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 213 NQPHGCQPLKHFSHVGCETPR 275
           N+P G   L  F+  GC  P+
Sbjct: 563 NRPTGGDALSEFNFCGCGWPQ 583


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 372 SLTWRNPSTCSST 410
           SL+W NP + +ST
Sbjct: 176 SLSWNNPCSINST 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,603
Number of Sequences: 336
Number of extensions: 2446
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)