Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0346.Seq
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    28   0.93 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   1.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.7  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   8.7  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 353 KLAPMRLSDLAEPFNVLFHVH*LRHFFCCWRTCATTHCASSLW*RIHSV 499
           KL    LSDL    + L+ V+ L+     WR  ATT+     W   H V
Sbjct: 376 KLRIEELSDLMNKADDLYEVNLLQRMLVLWRRKATTYEKIDFWMDGHDV 424


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 43  VSSLTWCSMAFRVATGDFRTD--AQHQQEIFDYLMSLAAFLRHFSPSAVKN--TPRHGII 210
           VS L+W S  +      F++   A+H   +  Y MS+ A L   SP  +KN  TP+ G+ 
Sbjct: 112 VSLLSWDSFFYTRDFPKFQSSRTARHITSLLTYPMSIGAILHKNSPYNLKNGLTPQ-GLQ 170

Query: 211 SISPM 225
           S++ +
Sbjct: 171 SLTAL 175


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 127 FDYLMSLAAFLRHFSPSAVKNTPRHGIISISP 222
           F +L+   +  RHF+PS  + TPR    +++P
Sbjct: 15  FQHLVGTLSQRRHFTPSRSRYTPRSAQRTVTP 46


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 393 STCSSTFTNCVTFFAVGV-PARRLIVLPHYGDAYIA 497
           S CS T+      F V V  + +L +LPH GDA IA
Sbjct: 427 SNCSLTWPVSEVVFQVAVVKSLKLQLLPHTGDAIIA 462


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 460  SRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDL 320
            S+++ TP   ++ +  N+ E  EG++ + + +    I+D  E  SDL
Sbjct: 894  SKKSPTPEPTEMAES-NISEESEGWKLIEQPNVESEIEDQDEESSDL 939


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  PWPSASRRAISGLTPNTNKKF 127
           PWP  SR+A+  L+P  +  F
Sbjct: 301 PWPGFSRQALKNLSPMLHFSF 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,656
Number of Sequences: 5004
Number of extensions: 42461
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)