Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0346.Seq
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 31 0.96
12_02_0021 + 12393828-12395207 29 3.9
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 29 3.9
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 28 5.1
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 28 5.1
05_01_0237 + 1782558-1782704,1782715-1782838,1782974-1783137 28 5.1
12_02_1276 - 27487424-27488050,27488258-27489172 28 6.8
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 28 6.8
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 28 6.8
11_06_0646 + 25855673-25856125,25856885-25857000,25857372-25857855 27 8.9
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 27 8.9
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 460 SRRAGTPTAK-KVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEAR 296
S AGT A ++ + + + EHV G R+ + +DD +++L++E G R
Sbjct: 630 SNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGR 685
>12_02_0021 + 12393828-12395207
Length = 459
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -3
Query: 463 MSRRAGTPTAKKVTQLVNV---EEHV-EGFRQVREAHRRELIDDYVELISDLIREVGEAR 296
MSRR A+ V ++VNV ++ V E ++E R+E E LIRE+ E
Sbjct: 345 MSRRGFQMAAEVVEEVVNVLCQKKRVKEALGVLKEEMRKEEFVPSRECYEVLIRELCEQG 404
Query: 295 QVDMAARL 272
+V++A RL
Sbjct: 405 EVEVAMRL 412
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 181 RQKERSGAGKPRATSDSRKFLVGVGRQSGNRPSRRGRPW 65
RQ++ S PR+ DS +F R GN +RR W
Sbjct: 228 RQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSW 266
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 178 QKERSGAGKPRATSDSRKFLVGVGRQSGNRPSRRGRPWSTMLVKRRSTLFVCLP 17
+KE + AG + T R L G Q P RRG S + + RR++L + LP
Sbjct: 826 EKENNPAGGAQPTKARRVSLCGGAHQQPAAPPRRG---SLIPLPRRNSLMLPLP 876
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 422 RHFFCCWRTCATTHCA 469
RHFF W C T HC+
Sbjct: 854 RHFFFLWCKCCTIHCS 869
>05_01_0237 + 1782558-1782704,1782715-1782838,1782974-1783137
Length = 144
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 379 VREAHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTWLKCLSGWQP 224
VR+AH E + EL + + Q +A VSQP+W +CL G P
Sbjct: 71 VRQAHVLEEVVRVAELWDGNGENLVQGGQATVAPL--VSQPSWRRCLGGHVP 120
>12_02_1276 - 27487424-27488050,27488258-27489172
Length = 513
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -3
Query: 409 VEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARL 272
++E + R + H RE D V +++D IR VG + VD++ARL
Sbjct: 147 IQEILSAKRILSFEHIRE---DEVRMLADEIRAVGPSVAVDLSARL 189
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 163 GAGKPRATSDSRKFLVGVGRQSGNR-PSRRGRPWSTMLVKRRSTLFVC 23
G G+ RAT+ + K + R P R RPWS + ++ VC
Sbjct: 271 GGGQARATASAAKKQAATAAAAKRRHPRRHRRPWSLQRRRHSTSSRVC 318
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 68 WPSASRRAISGLTPNTNKKFSTI*CRSRLSCATSLLLP 181
WPS+S S L+PN + K + + +L +TSL LP
Sbjct: 36 WPSSSSSPPSSLSPNNHVKIAVV-ADPQLMDSTSLGLP 72
>11_06_0646 + 25855673-25856125,25856885-25857000,25857372-25857855
Length = 350
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 472 GSTMSRRAGTPTAKKVTQLV-NVEEHVEGFRQVREAHRRELIDDYVELISD 323
GS + K++ Q V ++ +H + + REA RE++++ E++ D
Sbjct: 228 GSARQNQGHVQRLKQLAQQVADLMQHPQAYGLTREAETREMVNNLKEVLGD 278
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 175 KERSGAGKPRATSDS-RKFLVGVGRQSGNRPSRRGR 71
+ER AG + + R+ GVG Q G RP RR R
Sbjct: 65 RERGAAGGQQGAEPAVRRVRGGVGGQQGARPQRRRR 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,781
Number of Sequences: 37544
Number of extensions: 300420
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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