Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0346.Seq
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58826| Best HMM Match : SpoA (HMM E-Value=3.1)                      29   3.0  
SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_38884| Best HMM Match : SpoA (HMM E-Value=1.5)                      28   5.2  
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)                 28   6.9  
SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)                  27   9.1  

>SB_58826| Best HMM Match : SpoA (HMM E-Value=3.1)
          Length = 198

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 62  APWPSASRRAISGLTPNTNKKFSTI*CRSRLSCATSLLLPLKTRHAMGS 208
           +PW S SR+A+  + PN   +     CR    CA +   P+  R A G+
Sbjct: 134 SPWTSRSRKALGKVEPNQQSEERVASCR---RCAAAAGGPVAERAAAGT 179


>SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 457 RRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEAR 296
           R A T   +KV +++++EEH E  +     H R+   +  E +  L  EV EAR
Sbjct: 24  RGAATKLIRKVNEILDLEEHSEDEKLAIRQH-RDSAKEKAETLRALDDEVIEAR 76


>SB_38884| Best HMM Match : SpoA (HMM E-Value=1.5)
          Length = 399

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 62  APWPSASRRAISGLTPNTNKKFSTI*CRSRLSCATSLLLPLKTRHAMGS 208
           +PW S SR+A+  + PN   +     CR    CA +   P   R A GS
Sbjct: 191 SPWTSRSRKALGKVEPNQQSEERVASCR---RCAAAAGGPGAERAAAGS 236


>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
          Length = 1616

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 62   APWPSASRRAISGLTPNTNKKFSTI*CRSRLSCATSLLLPLKTRHAMGS 208
            +PW S SR+A+  + PN   +     CR    CA +   P   R A G+
Sbjct: 1216 SPWTSRSRKALGKVEPNQQSEERVASCR---RCAAAARGPGAERAAAGT 1261


>SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)
          Length = 419

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -1

Query: 402 STLKGSARSERRIGASLLMITLS*FLT 322
           STL+ S + ERR+  +LL++T++ F++
Sbjct: 321 STLQRSIQKERRLAVTLLLVTVTSFVS 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,824,775
Number of Sequences: 59808
Number of extensions: 336934
Number of successful extensions: 916
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)