Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0346.Seq
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144261-1|AAD37369.1|  456|Caenorhabditis elegans AP180-like ad...    30   1.1  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    28   4.6  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    28   4.6  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    28   4.6  

>AF144261-1|AAD37369.1|  456|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 456

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 135 SDVARGFPAPLLSFCR*KHATPWDHFNQPHGCQPL 239
           +DVA   PAP  S  +  +  P   + QP G QP+
Sbjct: 368 NDVASAAPAPATSAAQPMYTAPMGMYQQPFGAQPM 402


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 442 PTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVG 305
           PTA  +  +  V        ++R++  R+  D++VE   D I+E+G
Sbjct: 679 PTAPTMVTMKKVSSEFP-LPKIRDSFTRQFADEFVETSDDTIQEIG 723


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 442 PTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVG 305
           PTA  +  +  V        ++R++  R+  D++VE   D I+E+G
Sbjct: 657 PTAPTMVTMKKVSSEFP-LPKIRDSFTRQFADEFVETSDDTIQEIG 701


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 442 PTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVG 305
           PTA  +  +  V        ++R++  R+  D++VE   D I+E+G
Sbjct: 679 PTAPTMVTMKKVSSEFP-LPKIRDSFTRQFADEFVETSDDTIQEIG 723


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,990,051
Number of Sequences: 27780
Number of extensions: 244889
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)