Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0346.Seq
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.34 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 436 AKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARLG 269
           A + +QL N+ E V    ++ +   R L+D+ ++  SD+       R  D+A+ +G
Sbjct: 426 ATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMG 481


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 436 AKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAA 278
           A + +QL N+ E V    ++ +   R L+D+ ++  SD+       R  D+A+
Sbjct: 132 ATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 473  RKHNESSRRYANSKKSDAVSERGRAR*RVPPGQRGASAR 357
            R H++++  + +SK+S+ +SE    R ++     G +AR
Sbjct: 1865 RNHDQNNSSFNDSKESNEISEAECDRDQLVNRNYGVNAR 1903


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -2

Query: 176 EGEKWRRKAASDIR*SKISCWCWASVRKSPVATRKAME 63
           +G  WR     D+  + ++ W W    +   A R  +E
Sbjct: 52  KGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRMYIE 89


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 171 REVAQESRERHQIVENFLLVLG 106
           RE+A++    H  +EN L  LG
Sbjct: 87  REIAEKLHVSHTCIENHLKQLG 108


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 160 RHFSPSAVKNTPRHGIISISPMVASR 237
           +H SPS   ++P+H   S S   A+R
Sbjct: 58  QHNSPSPTGSSPQHSGSSASTSPAAR 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,775
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)