Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0346.Seq
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11040.1 68417.m01795 protein phosphatase 2C, putative / PP2C...    32   0.35 
At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA...    29   1.9  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    29   3.2  
At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ...    28   5.7  
At1g27530.1 68414.m03356 expressed protein Similar to gb|AF15188...    27   7.5  
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta...    27   9.9  
At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At4g11040.1 68417.m01795 protein phosphatase 2C, putative / PP2C,
           putative phosphoprotein phosphatase (EC 3.1.3.16) 2C -
           Arabidopsis thaliana, PIR2:S55457
          Length = 295

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 418 LVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREV 308
           L ++  H +G  Q+ + H+R+ IDD++ L  D + +V
Sbjct: 197 LCHIHHHKDGVEQILKIHKRKKIDDFIVLACDGLWDV 233


>At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA1)
           identical to gi:619753
          Length = 312

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 331 ISDLIREVGEARQVDMAARLGVSQPTWLKCLSGW 230
           +  L++++ EA    +A   G+S+P  +K ++GW
Sbjct: 239 VQSLLKDIKEATDKPVAVGFGISKPEHVKQIAGW 272


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +1

Query: 166  FSPSAVKNTPRH-GIISISPMVASRLSILAT 255
            F P++VK+T R  G++ ++ +++SRL IL T
Sbjct: 2414 FLPNSVKDTMRLLGVVKVTSILSSRLGILGT 2444


>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 298 RQVDMAARLGVSQPTWLKCLSGWQPW 221
           R +D+ AR+GV  P  ++CLS    W
Sbjct: 291 RSLDVCARMGVHDPMEVQCLSTNDAW 316


>At1g27530.1 68414.m03356 expressed protein Similar to gb|AF151884
           CGI-126 protein from Homo sapiens. EST gb|Z18048 comes
           from this gene
          Length = 174

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 163 HFSPSAVKNTPRHGI-----ISISPMVASRLSILATSVA 264
           HF P   KN PR GI     + ++P +A+ + IL  S A
Sbjct: 123 HFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGA 161


>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 755

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 16  WVNKRKASSVSSLTWCSMAFRVATGDFR 99
           W+N +  S    + W    F  + GDFR
Sbjct: 533 WLNSKTTSEFGPIDWMGAGFAKSCGDFR 560


>At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 691

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = -3

Query: 409 VEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPT---WLKCL 239
           VE+ +E F  + E HR     D+   + DL+   G   Q+         +P+   W   L
Sbjct: 436 VEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVL 495

Query: 238 SGWQPWG 218
            G   +G
Sbjct: 496 GGCSTYG 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,301
Number of Sequences: 28952
Number of extensions: 224875
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)