Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7MSG0 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_A2EWT5 Cluster: CDP-alcohol phosphatidyltransferase fam...    34   3.2  

>UniRef50_Q7MSG0 Cluster: Putative uncharacterized protein; n=1;
           Wolinella succinogenes|Rep: Putative uncharacterized
           protein - Wolinella succinogenes
          Length = 605

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = -2

Query: 548 TKTIFLVSQVSRMRSSQPLHIKKSCSMYNVIGKSMKNILDVFSPLKMSSKLFIVSHIKNA 369
           T T F  ++V R+ S+  LHI KS  +  V+GK      D F+  K   +L  ++H +  
Sbjct: 390 TTTFFEEAEVERLGSNNTLHIGKSLRLKEVMGKGNVLAFDPFASKKSKRQLDWLNHQREF 449

Query: 368 LGARTLRRLHLSTPKRHREH*RL 300
               T R  H    + H+E  R+
Sbjct: 450 FEEVT-RGGHWREREIHQERVRI 471


>UniRef50_A2EWT5 Cluster: CDP-alcohol phosphatidyltransferase family
           protein; n=1; Trichomonas vaginalis G3|Rep: CDP-alcohol
           phosphatidyltransferase family protein - Trichomonas
           vaginalis G3
          Length = 388

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 340 CKRRSVLAPSAFFMCETIKSLELIFRGENTSSIFFIL 450
           C++R+ LAP   F+  TI  L     G  T+S+FFI+
Sbjct: 232 CRKRAFLAPIPMFISATIICLMKFLFGSTTNSVFFIM 268


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,676,989
Number of Sequences: 1657284
Number of extensions: 10115893
Number of successful extensions: 22672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22667
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)