Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.68 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 352  SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 474
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 352  SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 474
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 352  SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 474
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 352  SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 474
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 475 HDFLM*SGCEDLILLTCDTK 534
           H FL+ +G +   + TCD K
Sbjct: 763 HPFLIPTGFDSCTVCTCDAK 782


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 203 TRHLTVWNANSDAPVCEG 256
           TR+ T WN  +   +C G
Sbjct: 113 TRYWTCWNGTATEQLCIG 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,492
Number of Sequences: 336
Number of extensions: 2674
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)