Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    29   0.72 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.3  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   8.9  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   8.9  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   8.9  

>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -2

Query: 572 YLTYKYFSTKTIFLVSQVSRMRSSQPLHIKKSCSMYNVIGKSMKNILDVFSPLKMSSKLF 393
           +L+YKY S +T++  S  SRM+   P     S +++ V  +     L  F+  K  +   
Sbjct: 93  HLSYKYQSPETVYSYSWYSRMKLDDP-----SSNLFAVSSRDQPIKLINFTTGKNKASYH 147

Query: 392 IVSHIKNALGARTLR 348
           ++ H +   G+  L+
Sbjct: 148 MIDHQERYQGSHCLQ 162


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 432  EYIFHTFTDYIIHATRFFDVKWL 500
            E+I +T+T+  IH+ RF    WL
Sbjct: 2694 EFISYTYTERFIHSLRFLKDSWL 2716


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 441 FHTFTDYIIHATRFFDVKW 497
           F T   ++ HATRF D  W
Sbjct: 142 FPTRGSFVTHATRFIDESW 160


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 467 YNVIGKSMKNILDVFSPLKMSSKLFIVS----HIKNALGARTLRRL 342
           +NV   S++N+ DV SPL +     + S     + N  G RT+ +L
Sbjct: 434 HNVYSLSIENVFDVLSPLSVQDLPGVGSSQAQKLFNLYGVRTIGQL 479


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 432 RCILASKNELQTFYCLAHKKCTRSENAPSFTSIYT*ATQRTLETKPES 289
           R +  + N  Q +     K+  RS +APS +++ T A +   +T P+S
Sbjct: 105 RRVDGASNVTQDYRKAKTKRSFRSVSAPSLSALATQAQRNVSKTLPQS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,883
Number of Sequences: 5004
Number of extensions: 44997
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)