Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    31   0.56 
12_02_0499 - 19725896-19726339,19726918-19726960,19727286-197273...    31   0.74 
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099...    31   0.74 
11_06_0046 - 19585032-19585109,19585198-19585278,19585460-195855...    28   5.2  
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330...    28   6.9  
07_03_1721 - 29023979-29025295                                         27   9.2  
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608...    27   9.2  

>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 395 KVWSSFLEARIHRVYFSYFYRLHYTCYTIF*CEVAVKISFCLLVTPKKWFLWRSIYKLDN 574
           +V    L    H+ YF+ +Y L +T  + F C+V   +  C  + P     WR    +D+
Sbjct: 50  EVCGDLLSLDTHKCYFANYYSLRFTIISKFVCKVCYGL-LCTSIAPVVLPSWRRPKGIDS 108

Query: 575 K 577
           +
Sbjct: 109 R 109


>12_02_0499 -
           19725896-19726339,19726918-19726960,19727286-19727389,
           19727784-19728539
          Length = 448

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/64 (17%), Positives = 34/64 (53%)
 Frame = -2

Query: 515 RMRSSQPLHIKKSCSMYNVIGKSMKNILDVFSPLKMSSKLFIVSHIKNALGARTLRRLHL 336
           R+  ++P   +    ++ +I +   +   + + ++++  +F+++H    +  R + + HL
Sbjct: 235 RIADAEPTEARPLQGLWKLIARLRLHTKGIMAIMQLTGWVFLLAHALGYMTCRNMEKSHL 294

Query: 335 STPK 324
           +TPK
Sbjct: 295 ATPK 298


>10_08_0262 +
           16307003-16308416,16309501-16309595,16309954-16309959,
           16310567-16310671
          Length = 539

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 395 FIVSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRPGPCTRDVL 252
           ++V+ ++   G++T+ RLHL   K + E  R      S  GP  RD++
Sbjct: 151 YVVTALRTIPGSKTIHRLHLYRSKPNGEQGRWTSQMVSVEGPLMRDLV 198


>11_06_0046 -
           19585032-19585109,19585198-19585278,19585460-19585501,
           19586058-19586149,19586243-19586312,19587140-19587223,
           19587696-19587770,19587878-19587949,19588082-19588331,
           19590224-19590291,19590380-19590460,19590642-19590683,
           19591240-19591331,19591425-19591494,19592322-19592405,
           19592878-19592952,19593060-19593131,19593264-19593305
          Length = 489

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -2

Query: 362 ARTLRRLHLSTPKRHREH*RLNRSPSSRPGP 270
           AR L +LHLST  RHR   R   SP   P P
Sbjct: 234 ARYLPQLHLSTSSRHRR--RRRGSPPLLPSP 262


>07_03_0251 +
           15831712-15832127,15832203-15832344,15832692-15833056,
           15833134-15833293,15833699-15834036,15834138-15834315,
           15834454-15834987,15835176-15836291
          Length = 1082

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -3

Query: 184 HSPCVSTVEFVAPPALGRARLVDRPVDRPAARLHA 80
           H+P    V FV  P  G   LVD  V  PA +LHA
Sbjct: 492 HAPFSKAVIFVEGPPAGIDILVDGLVLSPARKLHA 526


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 503 SQPLHIKKSCSMYNVIGKSMKNI 435
           +QP H  KSC  Y   G SM+N+
Sbjct: 91  NQPRHFCKSCQRYWTAGGSMRNL 113


>07_01_0784 +
           6083477-6083653,6086052-6086238,6086672-6086844,
           6087520-6087678,6088677-6088817,6088880-6088941,
           6089120-6089255,6091142-6091236,6091333-6091448,
           6091538-6091667,6091757-6091811,6091889-6091930,
           6092534-6092656
          Length = 531

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = -2

Query: 536 FLVSQVSRMRS----SQPLHIKKSCSMYNVIGKSMKNILDVFSPLKMSSKLFIVSHIKNA 369
           FL  Q SR  S    SQ +HI K+C+ + VI      + DV S  K + +L +    +N+
Sbjct: 427 FLKEQDSRFSSEPYVSQAVHITKACTAFAVIASD--GLWDVIS-TKRAVQLVVEGRERNS 483

Query: 368 LGARTLRRLHLSTP 327
             + +  ++ L  P
Sbjct: 484 GDSASADKVRLQKP 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,348
Number of Sequences: 37544
Number of extensions: 279416
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)