Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0343.Seq
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4) 30 1.3
SB_45113| Best HMM Match : CemA (HMM E-Value=6) 30 1.3
SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2) 30 1.3
SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67) 30 1.3
SB_24870| Best HMM Match : zf-GRF (HMM E-Value=0.019) 30 1.3
SB_24006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_19081| Best HMM Match : Metallothio_2 (HMM E-Value=4.4) 30 1.3
SB_17669| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_59765| Best HMM Match : Metallothio_2 (HMM E-Value=4.3) 29 4.1
SB_44353| Best HMM Match : GRP (HMM E-Value=4.9) 28 5.4
SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9) 28 5.4
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 7.1
>SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4)
Length = 362
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_45113| Best HMM Match : CemA (HMM E-Value=6)
Length = 363
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQIGCGYYFTIDQARCIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)
Length = 532
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 199 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 243
>SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)
Length = 695
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_24870| Best HMM Match : zf-GRF (HMM E-Value=0.019)
Length = 197
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_24006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_19081| Best HMM Match : Metallothio_2 (HMM E-Value=4.4)
Length = 260
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_17669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T+ A ++ N D PVCEGH PV +
Sbjct: 29 DQVGCGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T A ++ N D PVCEGH PV +
Sbjct: 29 DQIGCGYYFTTDQAQCIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_59765| Best HMM Match : Metallothio_2 (HMM E-Value=4.3)
Length = 229
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 164 CGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
CG +T+ A ++ N D PVCEGH PV +
Sbjct: 3 CGYYFTIEQAKSIKEYIPEGNTVFDFPVCEGHNLICKPVVS 43
>SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 361
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T A ++ N D PVCEGH PV +
Sbjct: 29 DQIGCGYYFTPDQAQCIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9)
Length = 224
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 152 DEFYCGNTWTVSCAHHSTRHLTVWNANSDAPVCEGHP*CTVPVAT 286
D+ CG +T A ++ N D PVCEGH PV +
Sbjct: 29 DQIGCGYYFTPDQAQCIKEYIPEGNTVFDFPVCEGHNLICKPVVS 73
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 450 KYEKYTRCILASKNELQTFYC-LAHKKCTRSENAPSFTSIYT*ATQRTLET 301
KY+ Y+ I + Q F+ L H CT ++ T IYT R + T
Sbjct: 1168 KYDSYSTRIYTTTRVRQLFHAYLRHDTCTTGQHDSYSTRIYTTTRVRQVNT 1218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,652
Number of Sequences: 59808
Number of extensions: 332544
Number of successful extensions: 695
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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