Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF024497-1|AAB70344.1|  329|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 358 LAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYMLHDFLM 489
           LA  AFF  ETIK  EL+F  +    +    L   L ++  FLM
Sbjct: 353 LAVDAFFEAETIKHAELMFFEKTLIPMTSYTLSAILLLILSFLM 396


>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
 Frame = -2

Query: 620 GASFHLNIQNVPS*IYYLTYKYFSTKTIFLVSQVSRMRSSQPLHIKKSCSMY----NVIG 453
           GA FH N+         L+ KY     + L+S            I   C ++     V+G
Sbjct: 82  GAVFHSNLSR------RLSLKYVYITCLILISACFLALPHAAHIILLLCIVFIVFGTVLG 135

Query: 452 KSMKNILDVFSPL-KMSSKLFI-VSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSR 279
            S+  ++  F  + K  S L +   H+  A G+ T    + S P  H+E     R+P   
Sbjct: 136 ISLSAVISNFVVIFKQQSFLLLQFLHLIGAFGSVTAVMFYQSAPSEHQEDCNSKRNPVLP 195

Query: 278 PGP 270
            GP
Sbjct: 196 TGP 198


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
 Frame = -2

Query: 620 GASFHLNIQNVPS*IYYLTYKYFSTKTIFLVSQVSRMRSSQPLHIKKSCSMY----NVIG 453
           GA FH N+         L+ KY     + L+S            I   C ++     V+G
Sbjct: 85  GAVFHSNLSR------RLSLKYVYITCLILISACFLALPHAAHIILLLCIVFIVFGTVLG 138

Query: 452 KSMKNILDVFSPL-KMSSKLFI-VSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSR 279
            S+  ++  F  + K  S L +   H+  A G+ T    + S P  H+E     R+P   
Sbjct: 139 ISLSAVISNFVVIFKQQSFLLLQFLHLIGAFGSVTAVMFYQSAPSEHQEDCNSKRNPVLP 198

Query: 278 PGP 270
            GP
Sbjct: 199 TGP 201


>AF024497-1|AAB70344.1|  329|Caenorhabditis elegans Hypothetical
           protein ZC308.4 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 624 KGSFVSFKYTKCTFIDLLSNL*ILLHKNHFFGVTSKQNEIFTA 496
           +G+F+   + KC  +   +N+ + + +N +FG  S   E FTA
Sbjct: 277 RGTFMGSGHRKCAILSTDNNIKVAVFEN-YFGKDSNGKESFTA 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,077
Number of Sequences: 27780
Number of extensions: 253210
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)