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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 417 RREYIEYIFHTFTDYIIHATRFFDVKW 497
           R +  +YIF    DY+     FFD  W
Sbjct: 46  RLDMPDYIFEEGDDYVTLPPEFFDSLW 72


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 449 SMKNILDVFS-PLKMSSKLFI-VSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRP 276
           ++KN LD ++  ++++  +   + H KN +       L ++  KR  E+ +LNR   S P
Sbjct: 399 NVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYP 458


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 329 PKRHREH*RLNRSPSSRPG 273
           P+    H RL R P + PG
Sbjct: 107 PQPRPPHPRLRREPEAEPG 125



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 329 PKRHREH*RLNRSPSSRPG 273
           P+    H RL R P + PG
Sbjct: 133 PQPRPPHPRLRREPEAEPG 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,112
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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