BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0343.Seq (624 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 24 1.0 AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.6 X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor pro... 21 9.8 >DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 391 Score = 24.2 bits (50), Expect = 1.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +3 Query: 417 RREYIEYIFHTFTDYIIHATRFFDVKW 497 R + +YIF DY+ FFD W Sbjct: 46 RLDMPDYIFEEGDDYVTLPPEFFDSLW 72 >AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice variant B protein. Length = 810 Score = 21.8 bits (44), Expect = 5.6 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -2 Query: 449 SMKNILDVFS-PLKMSSKLFI-VSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRP 276 ++KN LD ++ ++++ + + H KN + L ++ KR E+ +LNR S P Sbjct: 399 NVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYP 458 >X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor protein. Length = 168 Score = 21.0 bits (42), Expect = 9.8 Identities = 8/19 (42%), Positives = 10/19 (52%) Frame = -2 Query: 329 PKRHREH*RLNRSPSSRPG 273 P+ H RL R P + PG Sbjct: 107 PQPRPPHPRLRREPEAEPG 125 Score = 21.0 bits (42), Expect = 9.8 Identities = 8/19 (42%), Positives = 10/19 (52%) Frame = -2 Query: 329 PKRHREH*RLNRSPSSRPG 273 P+ H RL R P + PG Sbjct: 133 PQPRPPHPRLRREPEAEPG 151 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 156,112 Number of Sequences: 438 Number of extensions: 3022 Number of successful extensions: 4 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 18582456 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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