Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0343.Seq
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46370.2 68415.m05771 auxin-responsive GH3 family protein sim...    28   4.4  
At2g46370.1 68415.m05770 auxin-responsive GH3 family protein sim...    28   4.4  
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ...    28   5.8  
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf...    27   7.7  

>At2g46370.2 68415.m05771 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 420 REYIEYIFHTFTDYIIHATRFFDVKW 497
           R+ ++Y+F  F   ++HA R F+  W
Sbjct: 213 RDQVQYVFAVFAHGLVHAFRTFEQVW 238


>At2g46370.1 68415.m05770 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 420 REYIEYIFHTFTDYIIHATRFFDVKW 497
           R+ ++Y+F  F   ++HA R F+  W
Sbjct: 213 RDQVQYVFAVFAHGLVHAFRTFEQVW 238


>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
           protein low similarity to transcriptional repressor
           Not4-Np [Homo sapiens] GI:6856207; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif)
          Length = 944

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 287 SSRPGPCTRDVLHTRVRQN*HSKLLDDGYCGERSS 183
           S RP P   D++H+R+  N  S  LD  +   RSS
Sbjct: 514 SQRPHP-EEDIIHSRLLSNLSSSSLDTNHMASRSS 547


>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 417

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 392 IVSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRP 276
           IVS  K AL ++ L   H +T   HR    L+ SPSS P
Sbjct: 201 IVSSYKKALSSKLLSN-HSNTRNPHRPTKSLSCSPSSNP 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,061
Number of Sequences: 28952
Number of extensions: 225747
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)