Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0341.Seq
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.7  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 33  PALQGYRRCLRPYP 74
           P +  YR C RPYP
Sbjct: 251 PYVPFYRYCYRPYP 264


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 416 FRCVRARYHHLPC 454
           + C   R HH+PC
Sbjct: 935 YMCEGERKHHMPC 947


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 33  PALQGYRRCLRPYPQGAGSPFILAW*LRQRHQVLPDPGAQLR 158
           P+L   R  L PYPQ   + ++ +  L Q +Q+     A +R
Sbjct: 27  PSLSDTRPML-PYPQNYINSYLFSLSLAQNNQLFTHHKAPIR 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,329
Number of Sequences: 336
Number of extensions: 3154
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)