Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0335.Seq
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.7  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   3.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.2  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 694 SIGTCSLINWCSEVQLFDDFAR 629
           S+  C +++ CS +Q  + FAR
Sbjct: 374 SLPGCHMVDSCSNIQTGEQFAR 395


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 694 SIGTCSLINWCSEVQLFDDFAR 629
           S+  C +++ CS +Q  + FAR
Sbjct: 381 SLPGCHMVDSCSNIQTGEQFAR 402


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 721 GDSQAADCRMTCKTEH 768
           GD++ ADC+  C   H
Sbjct: 555 GDNRPADCQQNCMCTH 570


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 403 LSLARTSPRSTAPQHTPPDGSP 468
           LS   T   S +PQ+TPP G P
Sbjct: 77  LSGDMTHGASISPQNTPPAGYP 98


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 403 LSLARTSPRSTAPQHTPPDGSP 468
           LS   T   S +PQ+TPP G P
Sbjct: 77  LSGDMTHGASISPQNTPPAGYP 98


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 272 IKILCRITSLMTFSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYS 120
           I  LC +T+L+T S +S     + I+++     + V  + GT+    + Y+
Sbjct: 30  IYALCVVTALVTPSALSIIYYRQPIYAKISETKSIVAMVMGTIVNAFSCYT 80


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 288 HINPCGLFIIGGPQSDAG 341
           H+NP    ++GG   D G
Sbjct: 56  HVNPTANHVMGGAVPDVG 73


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 182 SDTTTV*TLCGTVAPPANTYS--QVTCV 105
           SD+TT+ T    ++P   TYS   ++CV
Sbjct: 8   SDSTTMATSSNAMSPMTPTYSMNSMSCV 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,672
Number of Sequences: 336
Number of extensions: 4112
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)