Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0335.Seq
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 100 3e-21
01_02_0051 - 10655867-10657057 98 8e-21
01_03_0090 - 12347165-12348349 97 1e-20
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 31 0.77
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 30 2.3
02_01_0375 + 2712289-2712957 29 4.1
03_05_0046 + 20235380-20235566,20235760-20235998 29 5.4
01_03_0011 + 11630506-11630853 29 5.4
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 28 7.1
02_03_0356 + 18073794-18074052,18074054-18074163 28 7.1
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 28 7.1
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 28 9.4
05_05_0130 - 22598744-22599043,22599296-22599307 28 9.4
>05_01_0264 + 2030080-2031270
Length = 396
Score = 99.5 bits (237), Expect = 3e-21
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = +3
Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
P QYLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY KD TKVD
Sbjct: 223 PEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 282
Query: 435 RSAAYAARWVAKSLVKAG 488
RS AY AR AKS+V +G
Sbjct: 283 RSGAYVARQAAKSIVASG 300
Score = 92.3 bits (219), Expect = 4e-19
Identities = 47/97 (48%), Positives = 61/97 (62%)
Frame = +1
Query: 4 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 183
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S
Sbjct: 139 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLIST 198
Query: 184 QHSEKITLETLRDEIREKVIKEVILHNILMREL*FTL 294
QH E +T + + +++E VIK VI L + F L
Sbjct: 199 QHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHL 235
Score = 79.0 bits (186), Expect = 4e-15
Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Frame = +2
Query: 416 GLHQGRPLRSIRRPMGRQVARQGGLVPVLHG-------QVAYAISVAEPLSITVFDYGTS 574
G G+ + R G VARQ V G QV+YAI V EPLS+ V YGT
Sbjct: 271 GAFSGKDPTKVDRS-GAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTG 329
Query: 575 HKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR--AGFPWEIPKPL 739
+++L IV++NFD RPG I+ L+L+ Y +T+ YGHFGR F WE+ KPL
Sbjct: 330 RIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPL 389
>01_02_0051 - 10655867-10657057
Length = 396
Score = 97.9 bits (233), Expect = 8e-21
Identities = 46/78 (58%), Positives = 52/78 (66%)
Frame = +3
Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
P QYLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY KD TKVD
Sbjct: 223 PEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 282
Query: 435 RSAAYAARWVAKSLVKAG 488
RS AY AR AKS+V G
Sbjct: 283 RSGAYIARQAAKSIVANG 300
Score = 92.3 bits (219), Expect = 4e-19
Identities = 47/97 (48%), Positives = 61/97 (62%)
Frame = +1
Query: 4 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 183
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S
Sbjct: 139 ELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLIST 198
Query: 184 QHSEKITLETLRDEIREKVIKEVILHNILMREL*FTL 294
QH E +T + + +++E VIK VI L + F L
Sbjct: 199 QHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHL 235
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/120 (40%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Frame = +2
Query: 416 GLHQGRPLRSIRRPMGRQVARQGGLVPVLHG-------QVAYAISVAEPLSITVFDYGTS 574
G G+ + R G +ARQ V +G QV+YAI V EPLS+ V YGT
Sbjct: 271 GAFSGKDPTKVDRS-GAYIARQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTG 329
Query: 575 HKTQQQLLSIVQKNFDLRPGKIVKELNLRA---PIYQRTSTYGHFGR--AGFPWEIPKPL 739
+++L IV +NFD RPG I+ L+L Y +T+ YGHFGR F WE+ KPL
Sbjct: 330 KIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPL 389
>01_03_0090 - 12347165-12348349
Length = 394
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/78 (57%), Positives = 53/78 (67%)
Frame = +3
Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
P +YLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY KD TKVD
Sbjct: 222 PDKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 281
Query: 435 RSAAYAARWVAKSLVKAG 488
RS AY AR AKS+V +G
Sbjct: 282 RSGAYIARQAAKSIVASG 299
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +1
Query: 4 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSL 183
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY+ GA VP RVHTV++S
Sbjct: 138 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLIST 197
Query: 184 QHSEKITLETLRDEIREKVIKEVI 255
QH E +T + + +++E VIK VI
Sbjct: 198 QHDETVTNDEIAADLKEHVIKPVI 221
Score = 75.8 bits (178), Expect = 4e-14
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Frame = +2
Query: 509 QVAYAISVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLR--APIYQRT 682
QV+YAI V EPLS+ V YGT +++L IV++NFD RPG + L+L+ + +T
Sbjct: 307 QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGNRFIKT 366
Query: 683 STYGHFGR--AGFPWEIPKPLIVE 748
+ YGHFGR F WE+ KPL E
Sbjct: 367 AAYGHFGREDPDFTWEVVKPLKYE 390
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 380 VGGARRGRFLWQGLHQGRPLRSIRRPMGRQVARQGGLVPVLHGQVAY 520
+ G++ G ++ L +GR +RSIR P G +++ LV HG+V +
Sbjct: 3206 ISGSKDGTCIFHTLREGRYVRSIRHPSGIGLSK---LVASQHGRVVF 3249
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 380 VGGARRGRFLWQGLHQGRPLRSIRRPMGRQVARQGGLVPVLHGQVAY 520
+ G++ G ++ L +G+ +RSIR P G +++ LV HG++ +
Sbjct: 2890 ISGSKDGTCIFHTLREGKYVRSIRHPSGAGLSK---LVASQHGRLVF 2933
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 22 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 129
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
>03_05_0046 + 20235380-20235566,20235760-20235998
Length = 141
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 320 RTSVRRGPDGTQNHRGHVWRVGGARRGRFLWQGLHQGRPLRSIRRPMGRQ 469
R S RRG G G RV G G + +G+ +G P R RR +GR+
Sbjct: 57 RGSRRRGGKGGDRATGGAIRVRG---GNGMVRGMREGAPSRWQRRSVGRR 103
>01_03_0011 + 11630506-11630853
Length = 115
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 356 NHRGHVWRVGGARRGR 403
NH G VWR+G ARR R
Sbjct: 17 NHHGSVWRLGRARRHR 32
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = +3
Query: 618 SIYDRAKSSKS*TSE---HQFIREQVPMDTL 701
+I DR++SSKS S+ HQF R+Q+P D +
Sbjct: 59 TILDRSESSKSNNSDDEAHQFWRKQLPDDII 89
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 474 ATWRPIGRRMLRSGRPW*SPCQRKRPRRAPPTRHTCPR*FCVPSGPR 334
AT R + +S SP P R PPTR T P C+ S R
Sbjct: 46 ATLRSLASACSKSKLTGLSPSAGVSPSRCPPTRSTFPNLNCMRSSKR 92
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 449 RRPMGRQVARQGGLVPVLHGQVAYAISVAEPLSITVFDY-GTSH---KTQQQLLS 601
RRP+ R L VL V YA+++A P T+F+Y G +H KT+ + L+
Sbjct: 379 RRPLATDTRRFVALTAVLMA-VLYALAIAIPSIWTLFEYSGDAHGIAKTKDKALA 432
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 618 SIYDRAKSSKS*TSEHQFIREQVPMDT 698
S+YD + TS +QF++E++PM+T
Sbjct: 217 SLYDYKNPRELSTSHNQFLKEKLPMNT 243
>05_05_0130 - 22598744-22599043,22599296-22599307
Length = 103
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 386 GARRGRFLWQGLHQGRPLRSIRRPMGRQVARQGGL 490
GARR R +++G QG I +P+ R++AR+GG+
Sbjct: 15 GARRHRIVFRGYIQG-----IAKPVIRRLARKGGV 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,743,668
Number of Sequences: 37544
Number of extensions: 458974
Number of successful extensions: 1319
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -