Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0335.Seq
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   6e-28
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   1e-25
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   4e-24
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             91   7e-19
SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2)                    29   3.1  
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                28   7.2  
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)                     28   9.5  
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.5  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  121 bits (292), Expect = 6e-28
 Identities = 57/98 (58%), Positives = 70/98 (71%)
 Frame = +1

Query: 1   EECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 180
           EE MPLTVVLAHK+NQK+AE RR+G   WARPDSKTQVT EY F  G  +P RVHT+V+S
Sbjct: 160 EELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRAIPLRVHTIVIS 219

Query: 181 LQHSEKITLETLRDEIREKVIKEVILHNILMREL*FTL 294
           +QH   IT+E LR E+ EK++K V+    L  +  F L
Sbjct: 220 VQHDPTITMENLRKELMEKIVKTVVPSKFLDEDTIFHL 257



 Score =  115 bits (276), Expect = 5e-26
 Identities = 49/77 (63%), Positives = 64/77 (83%)
 Frame = +2

Query: 509 QVAYAISVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTST 688
           Q++YAI +A+PLS+TVF YGTS K++ +LL IV+ NFDLRPGKIVKEL+L+ P+YQ++  
Sbjct: 330 QISYAIGIAQPLSVTVFSYGTSKKSEDELLKIVRDNFDLRPGKIVKELDLKKPVYQKSCV 389

Query: 689 YGHFGRAGFPWEIPKPL 739
           YGHF + GF WE PKPL
Sbjct: 390 YGHF-KPGFTWETPKPL 405



 Score =  110 bits (265), Expect = 1e-24
 Identities = 50/78 (64%), Positives = 58/78 (74%)
 Frame = +3

Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
           P+++LDE T+ H+ P GLF+IGGPQ DAGLTGRKIIVDTY             KD+TKVD
Sbjct: 245 PSKFLDEDTIFHLQPSGLFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVD 304

Query: 435 RSAAYAARWVAKSLVKAG 488
           RSAAYAARW+AKSLV  G
Sbjct: 305 RSAAYAARWIAKSLVSEG 322


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  113 bits (272), Expect = 1e-25
 Identities = 50/85 (58%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   EECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 180
           +E MPLTVVLAH LN+++A+ RRNG   W RPDSKTQVT EY F GG  VP RVHT+V+S
Sbjct: 91  DELMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGGKAVPLRVHTIVIS 150

Query: 181 LQHSEKITLETLRDEIREKVIKEVI 255
           +QH   I L+ +R E+ + V+KEV+
Sbjct: 151 VQHDPNIELDVMRKELMDYVVKEVV 175



 Score =  100 bits (240), Expect = 1e-21
 Identities = 48/77 (62%), Positives = 54/77 (70%)
 Frame = +3

Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
           P +Y+D  TV H+ P G F+IGGPQ DAGLTGRKIIVDTY             KD +KVD
Sbjct: 176 PEKYIDNDTVYHMQPSGSFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVD 235

Query: 435 RSAAYAARWVAKSLVKA 485
           RSAAYAARW+AKSLV A
Sbjct: 236 RSAAYAARWIAKSLVAA 252



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 27/46 (58%), Positives = 39/46 (84%)
 Frame = +2

Query: 509 QVAYAISVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVK 646
           Q++YAI VAEPLSI+VF YGT ++ +++LL +++ NFDLRPG IV+
Sbjct: 261 QLSYAIGVAEPLSISVFTYGTGYRPEEELLEVIKHNFDLRPGVIVR 306


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  108 bits (260), Expect = 4e-24
 Identities = 48/77 (62%), Positives = 62/77 (80%)
 Frame = +2

Query: 509 QVAYAISVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTST 688
           QVAYAI +AEPLSI+VF YG+ + T +QLL +++ NFDLRPG I+++LNL  PIY+ TST
Sbjct: 351 QVAYAIGIAEPLSISVFSYGSGNYTDKQLLGVIKDNFDLRPGVIIRDLNLLRPIYKATST 410

Query: 689 YGHFGRAGFPWEIPKPL 739
           +GHF + GFPWE PK L
Sbjct: 411 FGHF-KPGFPWEEPKKL 426



 Score =   99 bits (238), Expect = 2e-21
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
           P +YLD++T+ H+ P G FI GGP  DAGLTGRKIIVDTY             KD TKVD
Sbjct: 266 PEKYLDDKTIFHLLPSGQFIDGGPLGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDVTKVD 325

Query: 435 RSAAYAARWVAKSLVKAG 488
           RS AYA RW+AKSLV AG
Sbjct: 326 RSGAYACRWIAKSLVAAG 343



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 44/99 (44%), Positives = 61/99 (61%)
 Frame = +1

Query: 1   EECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 180
           EE MPLT VLAHKL  ++AE R+     W  PD KTQVT +Y    GA +P+RVHTV++S
Sbjct: 181 EELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIPERVHTVLIS 240

Query: 181 LQHSEKITLETLRDEIREKVIKEVILHNILMREL*FTLI 297
            QH+  + +E +R  ++E +I  VI    L  +  F L+
Sbjct: 241 TQHTPDVGIEEIRHHLKETIINHVIPEKYLDDKTIFHLL 279


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 45/77 (58%), Positives = 53/77 (68%)
 Frame = +3

Query: 255 PAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVD 434
           PA++L E T+ HINP G F+IGGP  DAGLTGRKIIVDTY             KD +KVD
Sbjct: 107 PAEWLHEGTLYHINPTGNFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVD 166

Query: 435 RSAAYAARWVAKSLVKA 485
           RSAAY  R+VAK++V A
Sbjct: 167 RSAAYIGRYVAKNIVAA 183



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 35/85 (41%), Positives = 52/85 (61%)
 Frame = +1

Query: 1   EECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 180
           +  MP  V  AH+L ++ +ELRRNG   W RPD+K+QVT  +   G +    +V  VV+S
Sbjct: 27  DSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW--EGDS---PKVDAVVLS 81

Query: 181 LQHSEKITLETLRDEIREKVIKEVI 255
            QH   I+L+ LR+ + E +IK V+
Sbjct: 82  TQHDPSISLDDLREAVLENIIKPVL 106


>SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 623 LRPGKIVKELNLRAPIYQRTSTYGHFGR 706
           +RP  I + L LR+P+Y  T+ YGH GR
Sbjct: 1   MRPAAIERRLKLRSPMYSETAAYGHMGR 28


>SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2)
          Length = 141

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 236 FSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTC 108
           FSL  +RK    ++ + C+D T    +CG        YS V+C
Sbjct: 47  FSLNGTRKDGSPVYLQYCADHTKCDDICGNFNSTILNYSLVSC 89


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 518 KQPDHAAPAQARLDERLGDPSGGVCCGAVDLGEVLARES 402
           K P+   PA  RL E+L DP  GV   AV++   LAR++
Sbjct: 102 KFPEALRPAFPRLREKLEDPEPGVQSAAVNVICELARKN 140


>SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 168

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 572 SHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGFPW 721
           +H   Q L+        LR G   KE     P YQ  + YG   R+GFP+
Sbjct: 9   THPAAQTLVQASGALKCLRVGHWAKECRSAWPGYQSYAGYGFQNRSGFPY 58


>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
          Length = 586

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +1

Query: 121 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVILH 261
           E  + G   V + VH  + + QH +K+ ++ ++  +++   K   LH
Sbjct: 524 EMAYRGAELVNEHVHKQLEAKQHEDKVKMDRIKKSVKKLSEKLARLH 570


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 371 VWRVGGARRGRFLWQGLHQGRPLRSIRR 454
           VW   G  RGRF   G HQ   ++  RR
Sbjct: 621 VWLASGIMRGRFSDNGFHQTEKVKKRRR 648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,876,576
Number of Sequences: 59808
Number of extensions: 531807
Number of successful extensions: 1638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)