Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0334.Seq
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   5.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   8.8  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 390 MWVRWLQWVPWLSH 431
           +WV  LQW  W+SH
Sbjct: 423 VWVNSLQWKTWISH 436


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 243 HGPVHPAIEDHAQSLLKLLV 184
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 253 HEFMEQCGAHRRCAAHTTVKCGNSSQPILS 342
           H F EQC   R     T ++CG  ++ + S
Sbjct: 271 HHFCEQCAITRYRKTPTCIQCGADTKGLFS 300


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 570 CXNPSRSLPRGVAAAAGASSCLRRHLCFD 656
           C +PS  LPR +       +CL +H  +D
Sbjct: 381 CESPSEKLPRRLYLLLVCITCLTKHQYYD 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,175
Number of Sequences: 5004
Number of extensions: 63933
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)