Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0334.Seq
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1212 - 25325911-25327047 33 0.32
03_02_1029 - 13488535-13493037 27 1.2
12_02_1233 + 27224219-27225607 30 2.3
02_01_0489 - 3522907-3523363,3523519-3523610,3525755-3526171,352... 29 5.3
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 25 5.7
07_03_0971 + 23038409-23039134,23040321-23040611 28 7.0
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 7.0
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 28 9.2
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 28 9.2
05_07_0134 - 27911920-27912762 28 9.2
>08_02_1212 - 25325911-25327047
Length = 378
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = -2
Query: 622 APAAAATPRGRERDGFXQSRHGFDASNTDSQLPSKW**KVEDLKTEEGQQIGRFPTSGAV 443
A A AA GR +GF R +A N +S + + VEDL+ E G + T+GA
Sbjct: 262 ADADAADGTGRGGEGFSLVRRQLEALNAESGMLRR---AVEDLRAEVGSRRAAVSTAGAP 318
Query: 442 D 440
D
Sbjct: 319 D 319
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 26.6 bits (56), Expect(2) = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 165 LFLHLVALGVLAAIVRDPRLLDEL--DRESSP*VHGAM 272
L L++V G LAA+ P LLD++ +++ P +HG +
Sbjct: 996 LNLNIVGRGFLAALEAKPTLLDQIREAQKNDPDMHGLL 1033
Score = 22.6 bits (46), Expect(2) = 1.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = +3
Query: 261 HGAMWGAPEMCCPHHCQMWKLV 326
HG +W +C P ++ +L+
Sbjct: 1049 HGTLWNGKRVCVPDSRELKQLI 1070
>12_02_1233 + 27224219-27225607
Length = 462
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 651 SRDDDEGKSWRXQPQQLLAEGNAT 580
SR + EG +WR + + + EGNAT
Sbjct: 182 SRTEPEGSTWRWEERSFVREGNAT 205
>02_01_0489 -
3522907-3523363,3523519-3523610,3525755-3526171,
3526488-3526565,3527021-3527292,3529346-3529541
Length = 503
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 239 P*VIPMSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 397
P ++ S N G +VLP S+ +PSP S +AS +D YH G
Sbjct: 226 PPLVDSSISFNHGGYEEVLPCFSSSHHQQPSPASMNASAAADDDQDYHHLSEG 278
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 24.6 bits (51), Expect(2) = 5.7
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 165 LFLHLVALGVLAAIVRDPRLLDEL--DRESSP*VHGAM 272
L L +V+ G LAA+ P LLD++ +++ P +HG +
Sbjct: 663 LNLSVVSHGFLAALEAKPTLLDQIREAQKNYPDMHGIL 700
Score = 22.2 bits (45), Expect(2) = 5.7
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = +3
Query: 261 HGAMWGAPEMCCPHHCQMWKLV 326
HG +W +C P + + +L+
Sbjct: 716 HGTLWNGNRVCVPDNKEFKQLI 737
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -3
Query: 729 RPHRQVLVATPHN--ANAVAFNYHGHDQSRDDDEGKSWRXQPQQLLAEGNATGFXNQGMD 556
RP+RQV ATPH+ + V F+ G + +G P L A G + D
Sbjct: 13 RPYRQVRAATPHSRAVSCVRFSPCGRLLATASLDGTVALLSPSSLAAIATLRGHADGVSD 72
Query: 555 LTQVT-QIASCRQNGDRKSKI 496
++ T C + DR +I
Sbjct: 73 ISWSTDSFYLCSASDDRTLRI 93
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 254 MSSWSNVGRTGDVLPTPLSNVETRPSPYS-----QHASHPSDHSLIYHDADVGA 400
+ S S+ GRTG + PT + PSP Q HPS S+ H A GA
Sbjct: 2142 LGSPSSSGRTGPLSPTNAGRMGPAPSPRGARTPFQRDPHPSQQSM--HSAGWGA 2193
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 462 NRPICCPSSVFRSSTFYHHFDGNWLSVLLASNPCLDCXNPSRSLPRGVAAAAG 620
N PIC + F + + +GNW + S P L C + + G A A G
Sbjct: 316 NEPICTCFTGFEPKSPQEYNNGNWTQGCVRSVP-LTCSSERNNTTAGGAGAGG 367
>07_03_0333 - 16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 245 VIPMSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDH 367
V+ +SW GD LP ++ ++ S Y + HP +H
Sbjct: 915 VLTAASWKLQVIQGDFLPEVVNIYDSTSSSYRKATKHPGEH 955
>05_07_0134 - 27911920-27912762
Length = 280
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 564 LDCXNPSRSLPRGVAAAAGASSC 632
+DC + S SL R VAAAA A+ C
Sbjct: 78 VDCTSSSPSLAREVAAAARAAGC 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,413,216
Number of Sequences: 37544
Number of extensions: 511158
Number of successful extensions: 1500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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