Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0334.Seq
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 29   5.4  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   9.4  
SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)                28   9.4  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +3

Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 233
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P + +E
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEE 60


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 FCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 233
           FCL +      LG++HLF  L+ + V  A++ D   +DE
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVDNLEIDE 532


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 453  LVGNRPICCPSSVFRSSTFYHHFDGNWLSVLLASNPCLDCXNP 581
            ++GN P    S+V+R  + +  FDG +L     S+PCL C NP
Sbjct: 1744 ILGNHP---NSNVYRMLSGFVEFDGYYLE----SDPCLVCNNP 1779


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 245 VIPMSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDH 367
           V+P +S  NV  T D+  + +   ET P P   H  HP  H
Sbjct: 121 VMPSTSSFNVSATKDITSSTVKK-ETVPPPQVHHMIHPRCH 160


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = -3

Query: 222 IEDHAQSLLKLLVPLGAGKGAMIPG*LCQSEXVDRSSIATHCHVHFPTWDGILTLP 55
           I  H Q    L   L  G GA +PG  C S+    S        ++PT  G   +P
Sbjct: 708 IPQHNQQASFLYPQLITGSGADVPGVACASQGYPFSGTRMPHQANWPTQQGTKAVP 763


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 296 PTPLSNVETRPSPYSQHASHPSDHS 370
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


>SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)
          Length = 303

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 202 RLCVILDCWMNWTVSHPHEFMEQCGAHRRCAAH 300
           R+CV   C M+  +SH    + +  AHR C AH
Sbjct: 140 RVCVACPCRMS--MSHVRAIVSKLKAHRVCVAH 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,875,681
Number of Sequences: 59808
Number of extensions: 548508
Number of successful extensions: 1437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)