Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0334.Seq
(755 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein. 47 8e-05
BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein. 47 8e-05
BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein. 47 8e-05
AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated tra... 47 8e-05
AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated tr... 47 8e-05
AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens ... 47 8e-05
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 47 8e-05
AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated tr... 47 8e-05
AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated tr... 47 8e-05
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 42 0.002
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 42 0.002
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 42 0.002
BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated pr... 42 0.002
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 42 0.002
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 42 0.002
AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory r... 40 0.010
AC098828-1|AAY24172.1| 38|Homo sapiens unknown protein. 38 0.052
AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated pro... 37 0.090
AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated pro... 37 0.090
AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein. 37 0.090
AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein. 36 0.21
AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein. 35 0.36
AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein. 35 0.36
AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein ... 35 0.36
U51240-1|AAB08975.1| 262|Homo sapiens lysosomal-associated mult... 32 2.6
U30498-1|AAA74018.1| 262|Homo sapiens E3 protein protein. 32 2.6
D42042-1|BAA07643.1| 269|Homo sapiens KIAA0085 protein. 32 2.6
BC106897-1|AAI06898.1| 262|Homo sapiens lysosomal associated mu... 32 2.6
BC106896-1|AAI06897.1| 262|Homo sapiens lysosomal associated mu... 32 2.6
AL137857-1|CAI19321.1| 262|Homo sapiens lysosomal associated mu... 32 2.6
AL137027-1|CAI19267.1| 262|Homo sapiens lysosomal associated mu... 32 2.6
>BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein.
Length = 317
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 37.5 bits (83), Expect = 0.052
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + YGA + + A+++PFFC QI
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICATATYGAYKQRAAWIIPFFCYQI 200
Query: 500 FDF 508
FDF
Sbjct: 201 FDF 203
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 260 KGYLISCVWNCYRYINGRNSS 280
>BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 500 FDF 508
FDF
Sbjct: 110 FDF 112
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 169 KGYLISCVWNCYRYINGRNSS 189
>BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 500 FDF 508
FDF
Sbjct: 110 FDF 112
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 169 KGYLISCVWNCYRYINGRNSS 189
>AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated
transmembrane protein 4 beta protein.
Length = 370
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 159 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 194
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 194 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 253
Query: 500 FDF 508
FDF
Sbjct: 254 FDF 256
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 313 KGYLISCVWNCYRYINGRNSS 333
>AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta, variant 1 protein.
Length = 317
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 200
Query: 500 FDF 508
FDF
Sbjct: 201 FDF 203
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 260 KGYLISCVWNCYRYINGRNSS 280
>AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens
cDNA PSEC0001 fis, clone NT2RM1000066, moderately
similar to Lysosomal-associated transmembrane protein 4
beta. ).
Length = 226
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 500 FDF 508
FDF
Sbjct: 110 FDF 112
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 169 KGYLISCVWNCYRYINGRNSS 189
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 72 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 107
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 107 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 166
Query: 500 FDF 508
FDF
Sbjct: 167 FDF 169
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 226 KGYLISCVWNCYRYINGRNSS 246
>AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta variant 2 protein.
Length = 317
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 200
Query: 500 FDF 508
FDF
Sbjct: 201 FDF 203
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 260 KGYLISCVWNCYRYINGRNSS 280
>AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated
transmembrane protein 4 beta protein.
Length = 226
Score = 46.8 bits (106), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
CC C VRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 38.3 bits (85), Expect = 0.030
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCLQI 499
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 500 FDF 508
FDF
Sbjct: 110 FDF 112
Score = 32.3 bits (70), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 673 KGYCISVVWRCYKYLTMRTAA 735
KGY IS VW CY+Y+ R ++
Sbjct: 169 KGYLISCVWNCYRYINGRNSS 189
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
S+R CC C VRTGTIILG+W++ ++L+ +L V P
Sbjct: 32 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 75
Score = 35.5 bits (78), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YGA + +L+PFFC ++FDF+
Sbjct: 107 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFV 142
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
S+R CC C VRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 35.5 bits (78), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YGA + +L+PFFC ++FDF+
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFV 121
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
S+R CC C VRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 35.5 bits (78), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YGA + +L+PFFC ++FDF+
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFV 121
>BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
S+R CC C VRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 34.3 bits (75), Expect = 0.48
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YG+ + +L+PFFC ++FDF+
Sbjct: 86 VSVLMFIISSMLVYGSISYQVGWLIPFFCYRLFDFV 121
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
S+R CC C VRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 35.5 bits (78), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YGA + +L+PFFC ++FDF+
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFV 121
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHLFLHLVALGVLAAIVRDP 218
S+R CC C VRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 35.5 bits (78), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YGA + +L+PFFC ++FDF+
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFV 121
>AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory
receptor protein.
Length = 281
Score = 39.9 bits (89), Expect = 0.010
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 335 YSQHASHPSDHSLIYHDAD-VGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFD 505
Y+Q S I H + + VT ++A M++GA +P +LLPFF +Q+FD
Sbjct: 8 YTQKNERGSHEVKIKHFSPYIAVCVTTFSLAFCCFMVHGAITKQPTHLLPFFFIQVFD 65
>AC098828-1|AAY24172.1| 38|Homo sapiens unknown protein.
Length = 38
Score = 37.5 bits (83), Expect = 0.052
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 87 SERGSEWLCCFCLXVRTGTIILGSWHL 167
S+R CC C VRTGTIILG+W++
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYM 37
>AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 36.7 bits (81), Expect = 0.090
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHL 167
CC C VRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 36.7 bits (81), Expect = 0.090
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHL 167
CC C VRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein.
Length = 124
Score = 36.7 bits (81), Expect = 0.090
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 111 CCFCLXVRTGTIILGSWHL 167
CC C VRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 404 VTVGTMALTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
V+V ++ +++YGA + +L+PFFC ++FDF+
Sbjct: 49 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFV 84
>AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 34.7 bits (76), Expect = 0.36
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 233 TGP*VIPMSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADV 394
+GP +P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1139 SGPESVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 34.7 bits (76), Expect = 0.36
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 233 TGP*VIPMSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADV 394
+GP +P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1139 SGPESVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein 1
protein.
Length = 1440
Score = 34.7 bits (76), Expect = 0.36
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 233 TGP*VIPMSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADV 394
+GP +P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1139 SGPESVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>U51240-1|AAB08975.1| 262|Homo sapiens lysosomal-associated
multitransmembrane protein protein.
Length = 262
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 104
>U30498-1|AAA74018.1| 262|Homo sapiens E3 protein protein.
Length = 262
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 104
>D42042-1|BAA07643.1| 269|Homo sapiens KIAA0085 protein.
Length = 269
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 83 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 111
>BC106897-1|AAI06898.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 104
>BC106896-1|AAI06897.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 104
>AL137857-1|CAI19321.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 104
>AL137027-1|CAI19267.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 31.9 bits (69), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 425 LTLIMIYGAARGKPAYLLPFFCLQIFDFL 511
++L ++ G + + YLLPF LQI D+L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYL 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,594,790
Number of Sequences: 237096
Number of extensions: 2784963
Number of successful extensions: 6513
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 6159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6513
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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