Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0334.Seq
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27090.1 68414.m03302 glycine-rich protein                          28   5.8  
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si...    28   7.7  
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    28   7.7  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    28   7.7  

>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 277 AHRRCAAHTTVKCGNSSQPILSTCFTS 357
           A  RC  H  +   NS QPI S C TS
Sbjct: 197 ALERCVEHAKLWLANSEQPIESNCNTS 223


>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
           similar to 17.9 kDa heat-shock protein [Helianthus
           annuus] GI:11990130; contains Pfam profile PF00011:
           Hsp20/alpha crystallin family; supporting cDNA
           gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
           small heat shock-like protein (RTM2) GI:7407072, small
           heat shock-like protein [Arabidopsis thaliana]
           GI:7407073
          Length = 366

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 624 WRXQPQQLLAEGNATGFXNQGMDLTQVTQIASCRQNGDR 508
           W+ QP+  +   + TGF  + M +T V      R  G+R
Sbjct: 25  WKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGER 63


>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 377 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQIFD 505
           +HD      V +G + +++    Y   R KP YL+ F C Q  D
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 377 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCLQIFD 505
           +HD      V +G + +++    Y   R KP YL+ F C Q  D
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,024,349
Number of Sequences: 28952
Number of extensions: 367893
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)