Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0330.Seq
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 142 4e-35
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 140 2e-34
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 118 7e-28
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 91 1e-19
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 71 2e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 69 7e-13
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 66 4e-12
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 58 1e-09
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 34 0.025
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 27 2.2
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 3.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.1
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 5.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 6.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.9
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 8.9
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 142 bits (345), Expect = 4e-35
Identities = 66/77 (85%), Positives = 72/77 (93%)
Frame = +3
Query: 3 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSS 182
EVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS
Sbjct: 216 EVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSS 275
Query: 183 TQASIEIDSLFEGIDFY 233
QASIEIDSLFEGIDFY
Sbjct: 276 AQASIEIDSLFEGIDFY 292
Score = 113 bits (271), Expect = 3e-26
Identities = 55/85 (64%), Positives = 65/85 (76%)
Frame = +2
Query: 257 EELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 436
EEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVGGSTRIP+VQKL+ DFFNGKE KS
Sbjct: 301 EELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGKEPCKS 360
Query: 437 INPDEXXXXXXXXXXXILHGDKSER 511
INPDE +L GD SE+
Sbjct: 361 INPDEAVAYGAAVQAAVLTGDTSEK 385
Score = 103 bits (246), Expect = 4e-23
Identities = 51/68 (75%), Positives = 52/68 (76%)
Frame = +1
Query: 553 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 732
GIETAGGVMT LIKRN YSDNQPGVLIQVFEGERA TKD NLLGKFEL
Sbjct: 400 GIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLGKFEL 459
Query: 733 TGIPPAPR 756
+GIPPAPR
Sbjct: 460 SGIPPAPR 467
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 140 bits (339), Expect = 2e-34
Identities = 65/77 (84%), Positives = 71/77 (92%)
Frame = +3
Query: 3 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSS 182
EVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS
Sbjct: 216 EVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSS 275
Query: 183 TQASIEIDSLFEGIDFY 233
QASIEIDSL+EGIDFY
Sbjct: 276 AQASIEIDSLYEGIDFY 292
Score = 113 bits (271), Expect = 3e-26
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +2
Query: 257 EELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 436
EEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVGGSTRIP++QKL+ DFFNGKE KS
Sbjct: 301 EELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGKEPCKS 360
Query: 437 INPDEXXXXXXXXXXXILHGDKSER 511
INPDE IL GD SE+
Sbjct: 361 INPDEAVAYGAAVQAAILVGDTSEK 385
Score = 101 bits (243), Expect = 8e-23
Identities = 50/68 (73%), Positives = 52/68 (76%)
Frame = +1
Query: 553 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 732
GIETAGGVMT LIKRN Y+DNQPGVLIQVFEGERA TKD NLLGKFEL
Sbjct: 400 GIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFEL 459
Query: 733 TGIPPAPR 756
+GIPPAPR
Sbjct: 460 SGIPPAPR 467
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 118 bits (285), Expect = 7e-28
Identities = 54/76 (71%), Positives = 64/76 (84%)
Frame = +3
Query: 3 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSS 182
EV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++ + RALRRLR+ACERAKR LSS
Sbjct: 220 EVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDDPRALRRLRSACERAKRALSSV 279
Query: 183 TQASIEIDSLFEGIDF 230
TQ ++E+DSL GIDF
Sbjct: 280 TQTTVEVDSLSNGIDF 295
Score = 99 bits (238), Expect = 3e-22
Identities = 43/65 (66%), Positives = 57/65 (87%)
Frame = +2
Query: 257 EELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 436
E++NA F++T++PV K L+D+K+ KA +HDIVLVGGSTRIPKVQ+L+ DFF+G+ LNKS
Sbjct: 305 EDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRALNKS 364
Query: 437 INPDE 451
INPDE
Sbjct: 365 INPDE 369
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +1
Query: 553 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 732
G+ G V + RN +DNQ V V++GER +N LG+F+L
Sbjct: 405 GVAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQGERVNCAENEPLGEFQL 464
Query: 733 TGIPPAPR 756
TGIPP PR
Sbjct: 465 TGIPPMPR 472
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 91.5 bits (217), Expect = 1e-19
Identities = 43/82 (52%), Positives = 60/82 (73%)
Frame = +2
Query: 257 EELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 436
EE+N DLF+ T++PVE+ L+D+ + K++I DIVLVGGSTRIPKVQ+LL+ FF GK+ +K
Sbjct: 333 EEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLESFF-GKKASKG 391
Query: 437 INPDEXXXXXXXXXXXILHGDK 502
INPDE +L G++
Sbjct: 392 INPDEAVAYGAAVQAGVLSGEE 413
Score = 85.8 bits (203), Expect = 6e-18
Identities = 43/68 (63%), Positives = 46/68 (67%)
Frame = +1
Query: 553 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 732
GIET GGVMT LI RN DNQ VLIQV+EGER +TKDNNLLGKF+L
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDL 488
Query: 733 TGIPPAPR 756
GIPPAPR
Sbjct: 489 RGIPPAPR 496
Score = 85.4 bits (202), Expect = 8e-18
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +3
Query: 3 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSS 182
EV +T+GDTHLGGEDFDNR++N+ + + RK D+ + +A+ +L+ E+AKRTLSS
Sbjct: 248 EVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQ 307
Query: 183 TQASIEIDSLFEGIDF 230
IEI+S F G DF
Sbjct: 308 KSVRIEIESFFNGQDF 323
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/67 (49%), Positives = 47/67 (70%)
Frame = +3
Query: 3 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSS 182
EV+ST GDTHLGGEDFD +V H V+ FK+ DL+ ++ A++R+R A E+AK LSS
Sbjct: 260 EVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSL 319
Query: 183 TQASIEI 203
++ I +
Sbjct: 320 SKTDISL 326
Score = 68.9 bits (161), Expect = 7e-13
Identities = 33/68 (48%), Positives = 41/68 (60%)
Frame = +1
Query: 553 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 732
GIET GGV T LI RN +D Q V I+VF+GER + +DN L+G F+L
Sbjct: 443 GIETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVRDNKLIGNFQL 502
Query: 733 TGIPPAPR 756
TGI PAP+
Sbjct: 503 TGIAPAPK 510
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Frame = +2
Query: 233 HVNYSCS---LEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 403
H+N S E+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + ++
Sbjct: 338 HINMEISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVK 397
Query: 404 DFFNGKELNKSINPDEXXXXXXXXXXXILHG 496
F +E KS+NPDE +L G
Sbjct: 398 SIFK-REPAKSVNPDEAVAIGAAIQGGVLSG 427
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 68.9 bits (161), Expect = 7e-13
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = +3
Query: 6 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSST 185
+ ++ D +LGGE + +VN F +EF++K D N R+L +LR CE KR LS+ T
Sbjct: 243 ILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRKNARSLAKLRAQCEITKRVLSNGT 302
Query: 186 QASIEIDSLFEGIDFY 233
AS +DSL +GIDF+
Sbjct: 303 TASAAVDSLADGIDFH 318
Score = 32.7 bits (71), Expect = 0.058
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 236 VNYSCSLEELNADLFRSTM-----EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 400
+++ S+ L DL S + V +++ A M+ I +++L GG++ PK+ L+
Sbjct: 315 IDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGGASNTPKLTSLM 374
Query: 401 QDFFNGKELNKS 436
+ F + + +S
Sbjct: 375 ESIFPEQTIIRS 386
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 66.5 bits (155), Expect = 4e-12
Identities = 29/74 (39%), Positives = 46/74 (62%)
Frame = +3
Query: 6 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSST 185
+KST D +LG + D ++++F EFK KYK D+ +N +A RL TA ER K+ LS++
Sbjct: 225 IKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSNPKATFRLATAVERLKKVLSANA 284
Query: 186 QASIEIDSLFEGID 227
A + ++ + ID
Sbjct: 285 NAPLNVEMIMNDID 298
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/65 (38%), Positives = 41/65 (63%)
Frame = +2
Query: 257 EELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 436
EEL L P+EK+L A + K ++ I +VGG TR+P V++++ ++F GK L+ +
Sbjct: 309 EELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRVPIVKEVIANYF-GKGLSFT 367
Query: 437 INPDE 451
+N DE
Sbjct: 368 LNQDE 372
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 233 HVNYSCSLEELNADLFRSTMEPVEKSLRDAKMDKAQI 343
H NYS S+ E + F +++L MDKA I
Sbjct: 208 HSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALI 244
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 1e-09
Identities = 24/66 (36%), Positives = 45/66 (68%)
Frame = +2
Query: 254 LEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 433
LE L D+ + +EP+ K+L+ A + ++I+ I+L GG++RIP +Q L D+ + +++K
Sbjct: 336 LESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRIPFIQSTLADYVSSDKISK 395
Query: 434 SINPDE 451
++N DE
Sbjct: 396 NVNADE 401
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = +3
Query: 33 LGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSL 212
L G + + +++ F +K+ DL+ N RAL RL R K LS++++A I+ L
Sbjct: 262 LSGNEINRKLIGFMKNSFYQKHGIDLSHNHRALARLEKEALRVKHILSANSEAIASIEEL 321
Query: 213 FEGIDF 230
+GIDF
Sbjct: 322 ADGIDF 327
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 33.9 bits (74), Expect = 0.025
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 94 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRALR*ILSLRVLTSTRQL-LVLARGAE 267
N K+ LP E + + + V G GP H+PH R LR + LR + QL VLA G +
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR--ENYPQLPFVLATGRQ 66
Query: 268 RRSV 279
R SV
Sbjct: 67 RTSV 70
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 221 Y*LLHVNYSCSLEELNADLFRSTMEPVEKSL 313
Y +HVN+S S + + D++R +P+E ++
Sbjct: 297 YERIHVNFSLSSYQQDYDIYRKPTDPIEVTI 327
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 485 ILHGDKSERCRICCCLM*HPF-PSVLRLLEVS*PHSSSVTLPSPLNRLRHSPPTLITNPE 661
IL D ++R R+ +M H + S + L E ++ PSP+ L +++
Sbjct: 754 ILVPDPAKRVRMSA-IMNHAYLRSHVSLFETYNDDEATSLRPSPIRLLSQKSLASVSSVS 812
Query: 662 YSSKYLRVSVL*PKITTCSVNSS*PGSH 745
S Y L P+IT S+N P H
Sbjct: 813 SISTYSSSIELTPQITKTSLNREKPALH 840
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 347 RGFEPYPSWHHGETSPLAP 291
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 88 LNSWTKWLTMRLSKSSPPKWVSPAVDF 8
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 599 TLPSPLNRLRHSPPTLITNPEYSSKYLR 682
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 536 TSSNSRSCTSQTCHRAR*QPGQLHHKLRP 450
T S +R C S +C R Q +LH K++P
Sbjct: 381 TCSRNRLCYSISCPRRLEQQARLHLKVQP 409
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.9
Identities = 26/92 (28%), Positives = 36/92 (39%)
Frame = -3
Query: 426 SSFPLKKSCRSFCTLGIRVEPPTSTISWI*ALSILASRRDFSTGSMVDLNRSAFSSSSEH 247
SSF S S + PTS+ S I + S S FS+ + + S+FSS+
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSS 374
Query: 246 E*LTCRSQYPQRENLSQCSLVWTMTRSSLPSH 151
T S + S + SSL SH
Sbjct: 375 SSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 60 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 197
+++ F EFK++ K D + L+ L + C R R SS SI
Sbjct: 711 ILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSI 756
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 273 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWW 362
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,586
Number of Sequences: 5004
Number of extensions: 65822
Number of successful extensions: 258
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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