Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0330.Seq
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 693 STLTLKYLDEY-SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 535
           + L ++ +D   SG +I   G+ + +++ +G   L      +S S+NT+  G Y
Sbjct: 330 NALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGSSDSINTKFYGMY 383


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 641 TLITNPEYSSKYLR 682
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 693 STLTLKYLDEY-SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 535
           + L ++ +D   SG +I   G+ + +++ +G   L       S S+NT+  G Y
Sbjct: 330 NALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMY 383


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 666 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEG 547
           E+ G+   +G   ++L SG+    LD  GH    S+   G
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGHAAFISMRHRG 213


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 344 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 451
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 758 PRGAGGIPVS 729
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 596  VTLPSPLNRLRHSPP 640
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,948
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)