Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5Y776 Cluster: Scratch1; n=1; Capitella sp. I ECS-2004...    36   0.69 
UniRef50_Q7Q7C1 Cluster: ENSANGP00000020876; n=2; Culicidae|Rep:...    34   2.1  
UniRef50_UPI00005A2DC4 Cluster: PREDICTED: similar to CUB and Su...    34   2.8  
UniRef50_Q3M820 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_Q1LSG2 Cluster: Two component transcriptional regulator...    33   3.7  
UniRef50_Q4SMT6 Cluster: Chromosome 8 SCAF14545, whole genome sh...    32   8.5  

>UniRef50_A5Y776 Cluster: Scratch1; n=1; Capitella sp. I
           ECS-2004|Rep: Scratch1 - Capitella sp. I ECS-2004
          Length = 344

 Score = 35.9 bits (79), Expect = 0.69
 Identities = 25/72 (34%), Positives = 33/72 (45%)
 Frame = +3

Query: 195 GCRCPRAHRRGSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPT 374
           GC+CP   +R SRP L L+ H R  TG  P    +CG +  A     R  V    +  P 
Sbjct: 250 GCQCPYCGKRFSRPWL-LQGHIRTHTGEKPFSCQQCG-KAFADKSNLRAHVQTHSTEKPY 307

Query: 375 SMTVSGQPAALQ 410
           S    G+  AL+
Sbjct: 308 SCGRCGKAFALK 319


>UniRef50_Q7Q7C1 Cluster: ENSANGP00000020876; n=2; Culicidae|Rep:
           ENSANGP00000020876 - Anopheles gambiae str. PEST
          Length = 255

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 27/80 (33%), Positives = 36/80 (45%)
 Frame = +3

Query: 195 GCRCPRAHRRGSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPT 374
           G +CP   +R SRP L L+ H R  TG  P +   C S+  A     R  V    +T P 
Sbjct: 172 GSKCPTCDKRFSRPWL-LQGHIRTHTGEKPFKCSVC-SKAFADKSNLRAHVQTHSNTKPY 229

Query: 375 SMTVSGQPAALQRRELCRDE 434
                G+  AL +  LC+ E
Sbjct: 230 QCGRCGKSFAL-KSYLCKHE 248


>UniRef50_UPI00005A2DC4 Cluster: PREDICTED: similar to CUB and Sushi
           multiple domains 2; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to CUB and Sushi multiple domains 2 -
           Canis familiaris
          Length = 383

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 225 GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQ-ASRELVDMSGSTNPTSMTVSGQPA 401
           G RP          R   + GQV E G+R+ ++ Q    E  D+ GS   T M VS   A
Sbjct: 37  GERPAQTRSPGGHSRASGSTGQVRELGTRLGSSVQFTCSEGYDLQGSKRITCMKVSDMFA 96

Query: 402 A-LQRRELCRDETA 440
           A    R +CR E A
Sbjct: 97  AWSDHRPVCRGEDA 110


>UniRef50_Q3M820 Cluster: Putative uncharacterized protein; n=1;
           Anabaena variabilis ATCC 29413|Rep: Putative
           uncharacterized protein - Anabaena variabilis (strain
           ATCC 29413 / PCC 7937)
          Length = 183

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 262 RLCYLRFSFGREPRRCARGQRHPLTKHQHSL--RAPTYFNKDLNISNFN 122
           +LCY   S GRE +RC + Q   + +HQ     RA T   + +++SN N
Sbjct: 126 KLCYSLMSQGREAQRCKKVQTTEILEHQQKFGCRATTAQLRHVSVSNGN 174


>UniRef50_Q1LSG2 Cluster: Two component transcriptional regulator,
           winged helix family; n=3; Cupriavidus|Rep: Two component
           transcriptional regulator, winged helix family -
           Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM
           2839)
          Length = 268

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 277 IRPVRCRSVGAAWSLRIKRAVSSSTCPDQQTRLQ*LSVXXXXXXXXXXCAGMRLRLTPSE 456
           ++P+R R +GA  +  ++RA   S  PD   RL               C G  +RLTP E
Sbjct: 106 VKPIRPRELGARIAALLRRAYPDSRQPD-DGRLTWGCFRFDAVTREATCHGQEVRLTPKE 164

Query: 457 LLARLICF 480
               L+ F
Sbjct: 165 FEVALLLF 172


>UniRef50_Q4SMT6 Cluster: Chromosome 8 SCAF14545, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF14545, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 534

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 183 CLVSGCRCPRAHRRGSRPKLNLK*HSRGRTGNTPGQV*ECGSRVV 317
           CL +G +CP   ++   P+ +L  H R  TG+ P    ECG R V
Sbjct: 230 CLDTGVQCPECGKKLCTPQ-SLGDHMRTHTGDRPFVCKECGRRFV 273


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,868,448
Number of Sequences: 1657284
Number of extensions: 8795402
Number of successful extensions: 22670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22667
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)