Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.3  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 195 GCRCPRAHRRGSRPKLNLK*HSRGRTGNTP 284
           GC  P A   GS  ++     +RG   NTP
Sbjct: 103 GCEMPSAGLCGSHDEIPDISSTRGNNNNTP 132


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 195 GCRCPRAHRRGSRPKLNLK*HSRGRTGNTP 284
           GC  P A   GS  ++     +RG   NTP
Sbjct: 51  GCEMPSAGLCGSHDEIPDISSTRGNNNNTP 80


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 195 GCRCPRAHRRGSRPKLNLK*HSRGRTGNTP 284
           GC  P A   GS  ++     +RG   NTP
Sbjct: 234 GCEMPSAGLCGSHDEIPDISSTRGNNNNTP 263


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 175 SLRAPTYFNKDLNISNFNAP 116
           +L  P+Y+N+D++ +++  P
Sbjct: 358 NLTYPSYYNQDVSCTHYQNP 377


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 246 LK*HSRGRTGNTPGQV*ECGSRVVAAH 326
           L+ H R  TG  P +  EC  R    H
Sbjct: 150 LQNHERTHTGEKPFECQECHKRFTRDH 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,983
Number of Sequences: 336
Number of extensions: 1997
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)