Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   2.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.5  

>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 345 VDMSGSTNPTSMTVSGQPAALQ 410
           VD S + NPT  TVSG  AA+Q
Sbjct: 393 VDTSDANNPTIGTVSGLEAAMQ 414


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 536  LFIILALAPSLSASQPYYTKHIRRASSSLGVKRSLIP 426
            L IIL +A  +  S+PY+    +R +++L  KR L P
Sbjct: 1105 LVIILPIAVFMGRSRPYHRLAHKRPTANLVSKRILSP 1141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,238
Number of Sequences: 5004
Number of extensions: 32248
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)