Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    30   1.5  
04_03_0060 - 10511421-10512494                                         28   4.7  
08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94...    28   6.2  
06_03_1361 + 29568927-29569214                                         28   6.2  
01_01_0631 - 4752606-4752706,4754039-4755578                           28   6.2  

>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 354 SGSTNPTSMTVSGQPAALQRRELCRDETALNAKRAACSSN 473
           S +T PTS   SGQ    ++R+ C+++   + KR +C  +
Sbjct: 430 SQATMPTSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKS 469


>04_03_0060 - 10511421-10512494
          Length = 357

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 213 AHRRGSRPKLNLK*HSRGR 269
           AHRRG+RP+L+L+ H   R
Sbjct: 185 AHRRGARPRLHLRAHLMSR 203


>08_01_0117 +
           941334-941339,941720-941906,942444-942565,942648-942656,
           942965-943067,943204-943247,943487-943516,943615-943737,
           943816-943841,943934-944015,944137-944178,944259-944292,
           944424-944451,944779-945022,945023-945124,945318-945443,
           945533-945715,945803-945961
          Length = 549

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -2

Query: 348 RRAHGSLDAQRPRGSHTPTPDRAYCQCDPGCVT*DLVSAASRAGVPADSDIH 193
           RR+ G    +R RG H P P R   +   G  +    +AA R+G P  S+I+
Sbjct: 16  RRSGGVGRLRRERGGHFPIPSRFADETLTGAHS-PPPAAAHRSGTPQSSEIN 66


>06_03_1361 + 29568927-29569214
          Length = 95

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 286 PGVLPVRPRLCYLRFSFGREPRRCARGQRHPLTKHQHSLR 167
           PG+L +R +L +    F R   R  RG+R P  + + S R
Sbjct: 49  PGLLVIRVKLLHREHMFRRGGARLGRGRRTPRARARASRR 88


>01_01_0631 - 4752606-4752706,4754039-4755578
          Length = 546

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 192 SGCRCPRAHRRGSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNP 371
           +G R P   RR      +       R G TP +  E   R +    ++  L D +G++NP
Sbjct: 12  TGTRIPSHRRRKGSSDGSRARADASRRGPTPTKETEIPGRPLKRSSSTLSLDDAAGASNP 71

Query: 372 TS 377
           TS
Sbjct: 72  TS 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,874
Number of Sequences: 37544
Number of extensions: 258957
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)