Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43891| Best HMM Match : zf-C2H2 (HMM E-Value=3e-30)                 29   3.6  
SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_44864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 201 RCPRAHRRGSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSG 359
           +C +  +R +R   NLK H     G  P Q  ECG R   +      L+  SG
Sbjct: 198 QCDQCGKRFTRSG-NLKVHLITHAGQKPHQCDECGKRFTLSRHLKLHLITHSG 249


>SB_43891| Best HMM Match : zf-C2H2 (HMM E-Value=3e-30)
          Length = 130

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 201 RCPRAHRRGSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSG 359
           +C +  +R +R   NLK H     G  P Q  ECG R   +      L+  SG
Sbjct: 6   QCDQCGKRFTRSG-NLKVHLITHAGQKPHQCDECGKRFTLSRHLKLHLITHSG 57


>SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 NLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSG 359
           NLK H R  +G  P +  ECG     ++  SR L   SG
Sbjct: 167 NLKEHIRRHSGEKPYKCDECGKSFAFSNSLSRHLKVHSG 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,140
Number of Sequences: 59808
Number of extensions: 292178
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)