Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71177-3|CAA94869.1|  325|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z70210-2|CAA94148.1|  200|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B...    29   2.4  
AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger t...    29   2.4  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z71177-3|CAA94869.1|  325|Caenorhabditis elegans Hypothetical
           protein AC3.6 protein.
          Length = 325

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 318 RPRGSHTPTPDRAYCQCDPGCVT*DLVSAASRAGVPAD 205
           RP GS  P PD  YC+C     T +  +  ++A  P +
Sbjct: 270 RPGGSGRPGPDSGYCKCPQRGKTDEFSNYNTKASTPTE 307


>Z70210-2|CAA94148.1|  200|Caenorhabditis elegans Hypothetical
           protein K08H2.2 protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 327 DAQRPRGSHTPTPDRAYCQCDPGC 256
           DA +P     PT   A C+C PGC
Sbjct: 116 DAPQPEDIAIPTGGLAKCECSPGC 139


>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
           protein T05A10.1f protein.
          Length = 2048

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 471 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 527

Query: 393 QP 398
           QP
Sbjct: 528 QP 529


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
           protein T05A10.1e protein.
          Length = 2101

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 471 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 527

Query: 393 QP 398
           QP
Sbjct: 528 QP 529


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
           protein T05A10.1d protein.
          Length = 2134

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 471 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 527

Query: 393 QP 398
           QP
Sbjct: 528 QP 529


>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
           protein T05A10.1g protein.
          Length = 1888

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 471 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 527

Query: 393 QP 398
           QP
Sbjct: 528 QP 529


>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
           protein T05A10.1i protein.
          Length = 1927

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 471 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 527

Query: 393 QP 398
           QP
Sbjct: 528 QP 529


>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
           protein T05A10.1j protein.
          Length = 1509

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 471 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 527

Query: 393 QP 398
           QP
Sbjct: 528 QP 529


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
           protein T05A10.1c protein.
          Length = 1692

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 29  HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 85

Query: 393 QP 398
           QP
Sbjct: 86  QP 87


>Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical
           protein T05A10.1b protein.
          Length = 725

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 494 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 550

Query: 393 QP 398
           QP
Sbjct: 551 QP 552


>AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B
           protein.
          Length = 692

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 494 HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 550

Query: 393 QP 398
           QP
Sbjct: 551 QP 552


>AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 HRR-GSRPKLNLK*HSRGRTGNTPGQV*ECGSRVVAAHQASRELVDMSGSTNPTSMTVSG 392
           HR+ G++  ++   +S G T  +PG      SR++ A   S+ L ++SGS +      SG
Sbjct: 51  HRQIGAQSSVDHDSNSGGSTRTSPGPK---DSRMLQAASRSQSLFELSGSKHFMGSLTSG 107

Query: 393 QP 398
           QP
Sbjct: 108 QP 109


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 315 PRGSHTPTPDRAYCQCDP 262
           P G   P PD AYC C P
Sbjct: 270 PGGRGLPGPDAAYCACPP 287


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 YARSGVGVWEPRG 316
           Y+RSGV VW PRG
Sbjct: 6   YSRSGVFVWSPRG 18


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 YARSGVGVWEPRG 316
           Y+RSGV VW PRG
Sbjct: 6   YSRSGVFVWSPRG 18


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,021,581
Number of Sequences: 27780
Number of extensions: 202453
Number of successful extensions: 437
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)