Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.6  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   2.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   2.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 232 REPRRCARGQRHPLTKHQHSLRAPTYFNKDLNISNFN 122
           R P +C++   H      HS   PT  +  L +S  N
Sbjct: 360 RTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGIN 396


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 511 PRCPPANHIIQN 476
           PRCPP +  I+N
Sbjct: 59  PRCPPGSKFIKN 70


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 511 PRCPPANHIIQN 476
           PRCPP +  I+N
Sbjct: 59  PRCPPGSKFIKN 70


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 193 LTKHQHSLRAPTYFNKDLNISNF 125
           LTKH    +   YF +D+ +++F
Sbjct: 209 LTKHNVPEQRLNYFTEDVGLNHF 231


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 193 LTKHQHSLRAPTYFNKDLNISNF 125
           LTKH    +   YF +D+ +++F
Sbjct: 209 LTKHNVPEQRLNYFTEDVGLNHF 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,499
Number of Sequences: 438
Number of extensions: 2287
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)